FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 46/87 (52.87%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            V+FDV    +  GRIVM L  D+VPKTA+NFR LC   KG GYKG +FHRII  FM+Q             SIYG  F DE+F LKH
Sbjct:    9 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKH 95          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 46/95 (48.42%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  414 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            T  +FD+ I  +PAGR+   LF DVVPKTA NF+ LC G+K         Y G SFHR IK FM+Q             SIYG  FEDE+F LKH
Sbjct:    4 TIAYFDITIANEPAGRLTFELFDDVVPKTANNFKHLCIGDKTNEAGVKLAYAGSSFHRCIKGFMLQGGDFTRGDGTGGESIYGEKFEDENFELKH 98          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 46/96 (47.92%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +VF D+ +  KP GRI + LF    PKT ENFRALCTGE G          YKG   HR++K FMIQ             SIYG  F+DE FVLKH
Sbjct:    7 RVFLDMALDEKPIGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKH 102          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 48/110 (43.64%), Postives = 64/110 (58.18%), Query Frame = 3
Query:  369 VNSMAKDV-----ELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG-YGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            VN +A DV     +    +T KVFFD++ G +  GRIV+GL+G V PKTA+NF  L T      G+ G +FHR+I +FM+Q             SIYG +F DE+F LKH
Sbjct:   16 VNVIASDVGELIDQDDEVITQKVFFDIEHGEEKVGRIVIGLYGKVCPKTAKNFYKLSTTTNSKKGFIGSTFHRVIPNFMVQGGDFTDGTGVGGKSIYGDTFPDENFTLKH 125          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  468 MGLFGDVVPKTAENFRALCTGEKGYG------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            M LF DVVP+TAENFRALCTGEKG G      YKG SFHR+I  FM Q             SIYG+ F+DE+F+ KH G
Sbjct:    1 MELFQDVVPQTAENFRALCTGEKGMGDRKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTG 79          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 45/88 (51.14%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            K F D++I G+ AGRIV+ L GDVVPKT +NF  L        YKG +FHR+I DFMIQ             SIYG  FEDE+F LKH
Sbjct:   24 KAFMDIEIDGESAGRIVLELRGDVVPKTVKNFIGLFDK-----YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDENFTLKH 106          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 43/82 (52.44%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  450 PAGRIVMGLFGDVVPKTAENFRALCTGE-----KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            PAGR+   LF D+VP+T+ENFR LCTGE        GYK   FHRIIKDFM Q             SIYG  F+DE+F LKH
Sbjct:    2 PAGRLKCELFSDIVPRTSENFRQLCTGEFRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDENFTLKH 83          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +  K FFD+  G +  GRI+  LF DV P T  NFR LCT +  +GYKG  FHRII  FM Q             SIYG+ F+DE+F  KH
Sbjct:    1 MAAKAFFDIKAGDERLGRIIFELFNDV-PDTTRNFRELCTHKNNFGYKGSVFHRIIPGFMCQGGDFTNGDGTGGKSIYGNKFKDENFNHKH 90          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE------KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGS-SFEDESFVLKH 680
            VF D+ I G+  GRI + LF  +VPKTAENFR  CTGE      K  GYK  +FHRII+ FMIQ             +I+ S +F DE+F LKH
Sbjct:    7 VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKH 100          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 44/96 (45.83%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG--------YGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +VF D+ +     GRI + LF +  PKT ENFRALCTGE G          YK   FHRI+K FMIQ             SIYG  F+DE F LKH
Sbjct:    6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKH 101          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
CYPH_ENCCU1.989e-1752.87Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
PPID_CRYNE5.787e-1748.42Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
CYP9_CAEBR2.199e-1647.92Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYPB_YEAST3.751e-1643.64Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
CYPH_ALLCE4.899e-1655.70Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
PPIA_NEOCA1.425e-1551.14Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
PPIH_USTMA2.432e-1552.44Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
PPIA_SCHMA5.417e-1546.15Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPIH_SCHPO7.075e-1547.87Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
CYP9_CAEEL3.511e-1445.83Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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