FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 58/97 (59.79%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            KVFFDV IG +PAGR+ M LF DVVPKTAENFRALCTGEKG G       +KG  FHRII +FMIQ             SIYG+ F+DE+F LKH G
Sbjct:   23 KVFFDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVALHFKGSKFHRIIPEFMIQGGDFTRHNGTGGESIYGNKFKDENFDLKHTG 119          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 55/104 (52.88%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  375 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            S A + +   KVT KV+FD+ IG +  GR++ GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDFMIQ             SIYG  F DE+F LKH G
Sbjct:   31 SAADEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 134          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 56/104 (53.85%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  375 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            S A + +   KVT KV+FD+ IG +  GR+V+GLFG  VPKT +NF AL TGEKG+GYK   FHR+IKDFMIQ             SIYG  F DE+F LKH G
Sbjct:   31 SAADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 134          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 57/88 (64.77%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            K FFD+ IGGKPAGRIV  LF DV PKT ENFRALCTGEKG+GYKG  FHRII  FM Q             SIYGS FEDE+F  KH
Sbjct:    4 KCFFDISIGGKPAGRIVFALFDDV-PKTVENFRALCTGEKGFGYKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKH 90          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 57/109 (52.29%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  375 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +M  +     K+T KVFFD++I  KPAGRIV GL+G  VPKT ENFRALCTGEKG G       YK   FHRII +FMIQ             SIYG  F DE+F +KH
Sbjct:   17 AMPSEAGKDPKITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKH 125          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 57/95 (60.00%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            +V+FD+ IG KP GRIV  LF D+VPKTAENFRALCTGEKG G       Y+G  FHRIIK+FMIQ             SIYG  FEDE+FVLKH
Sbjct:    5 RVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKH 99          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            V+FD++ G KP GR+V+GL+G  VPKTAENFRAL TGEKG+GY+G +FHR+IK+FMIQ             SIYG  F+DE+F ++H
Sbjct:   22 VYFDIEHGNKPLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRH 108          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 54/93 (58.06%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+   G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG SFHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDITADGEPLGRVCFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 54/93 (58.06%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+   G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG SFHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDISADGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.422e-23
Identity = 56/97 (57.73%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  417 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            KVFFD+ IGG PAGR+VM LF D  PKTAENFRALCTGEKG G       YKG +FHR+I  FM Q             SIYG+ F DE+FV KH G
Sbjct:    5 KVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTG 101          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
CYP1_CAEEL2.866e-2459.79Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
PPIB_HUMAN3.743e-2452.88Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
PPIB_BOVIN3.743e-2453.85Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPIA_ECHGR3.743e-2464.77Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPIB_DICDI4.888e-2452.29Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPID_RHIOR8.338e-2460.00Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIB_ASPOR8.338e-2456.32Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIA_RAT1.089e-2358.06Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_CRIGR1.089e-2358.06Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
CYPH_SOLLC1.422e-2357.73Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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