FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 60/125 (48.00%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  318 IVQLSKAPSVKYRRMFCVNSMAKDVELQAKVTT--KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            I   S A SV   ++     + ++    +K++T  +VFFD+    +P GRIVM L  DVVPKTAENFRALCTGEKG+GYKG  FHR+I +FM Q             SIYG+ F DE+F LKH G
Sbjct:   33 ITLASSACSVNRGQLQFGIQIVREYSKASKMSTLPRVFFDMTADNEPLGRIVMELRSDVVPKTAENFRALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTG 157          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKH 680
            V+FD+ I GKPAGRI   LF DVVPKTA+NFRALCTGE+G+GYKG  FHR+I  FM+Q             SIYG  F DE+F LKH
Sbjct:    3 VYFDISIDGKPAGRIEFQLFEDVVPKTAKNFRALCTGEQGFGYKGSKFHRVIPQFMLQGGDFTRGDGTGGKSIYGEKFADENFKLKH 89          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V+ DV   G+P GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKHVG
Sbjct:   47 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVG 135          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/89 (59.55%), Postives = 61/89 (68.54%), Query Frame = 3
Query:  420 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V+ DV   G+P GR+V+ L  DVVPKTAENFRALCTGEKG+GYKG +FHR+I  FM Q             SIYGS F DE+F LKHVG
Sbjct:   47 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVG 135          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_PAPAN (Peptidyl-prolyl cis-trans isomerase A OS=Papio anubis GN=PPIA PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_PANTR (Peptidyl-prolyl cis-trans isomerase A OS=Pan troglodytes GN=PPIA PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_PANPA (Peptidyl-prolyl cis-trans isomerase A OS=Pan paniscus GN=PPIA PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_MACMU (Peptidyl-prolyl cis-trans isomerase A OS=Macaca mulatta GN=PPIA PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_HYLSY (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates syndactylus GN=PPIA PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PPIA_DROME1.857e-2348.00Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPIA2_RHIOR1.857e-2359.77Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPIF_RAT2.426e-2359.55Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE2.426e-2359.55Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIA_PONPY2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]
PPIA_PAPAN2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Papio anu... [more]
PPIA_PANTR2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Pan trogl... [more]
PPIA_PANPA2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Pan panis... [more]
PPIA_MACMU2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Macaca mu... [more]
PPIA_HYLSY2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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