FC869300

Overview
NameFC869300
Unique NameFC869300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9499 contig Ccv1_Contig9499:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLE (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates leucogenys GN=PPIA PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_HYLLA (Peptidyl-prolyl cis-trans isomerase A OS=Hylobates lar GN=PPIA PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_HUMAN (Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_GORGO (Peptidyl-prolyl cis-trans isomerase A OS=Gorilla gorilla gorilla GN=PPIA PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_CERAE (Peptidyl-prolyl cis-trans isomerase A OS=Cercopithecus aethiops GN=PPIA PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.426e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  399 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +A+   +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT EKG+G+KG SFHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:  135 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTG 230          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  399 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +A+   +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT EKG+G+KG SFHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:  135 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTG 230          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  399 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +A+   +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT EKG+G+KG SFHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:  135 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTG 230          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  399 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            +A+   +V+ D+ IG KPAGRI M L  DVVP TAENFR LCT EKG+G+KG SFHRII  FM Q             SIYG  F+DE+F+LKH G
Sbjct:  135 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTG 230          
BLAST of FC869300 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  408 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVG 686
            V   VFFD+ + G+P GR+   LF D VPKTAENFRAL TGEKG+GYKG  FHRII  FM Q             SIYG  FEDE+F+LKH G
Sbjct:    2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTG 94          
The following BLAST results are available for this feature:
BLAST of FC869300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
PPIA_HYLLE2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HYLLA2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Hylobates... [more]
PPIA_HUMAN2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Homo sapi... [more]
PPIA_GORGO2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Gorilla g... [more]
PPIA_CERAE2.426e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Cercopith... [more]
PPIE_PONAB4.138e-2355.21Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE4.138e-2355.21Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPIE_HUMAN4.138e-2355.21Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
PPIE_BOVIN4.138e-2355.21Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPIA_RABIT4.138e-2356.99Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]

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Properties
Property NameValue
Genbank descriptionC31010G01EF AbioticL1 Citrus clementina cDNA clone C31010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869300 ID=FC869300; Name=FC869300; organism=Citrus clementina; type=EST; length=686bp
TACAAAATCAAAAGGTCTTCCAACCTAATAGAAGCTTCTTATTAGTTATC
ACTGGCTGCAGGCTCCAGCTGCGGCAAATTTGGGCGACCCCTATTACCTA
ATCCATTGTTATGGCTTCTACTGTCTCTACTCAGATGCGGCTGCATAGCC
CCGCCCTCATTTTCCAGGGCAGTTATAGCCAAGGTGTTGCAAATGTTTGT
ATGCTACCTATGACGTCTAGCATTACAAATTCGCAGTCAGGTCATTGCCC
AGCTTCTACTTTGAAGTTGTCTGGAAGAGCATTGACATCAAGATCCCACT
ATGCATCAAGCTTTCCCATCGTACAGCTTTCTAAAGCACCTTCTGTTAAG
TATCGAAGAATGTTCTGTGTCAACTCAATGGCAAAGGATGTAGAGCTGCA
AGCAAAAGTGACAACCAAAGTTTTCTTTGACGTAGATATTGGAGGTAAAC
CTGCAGGTAGAATAGTAATGGGCCTTTTTGGAGATGTTGTTCCGAAAACA
GCTGAGAACTTTCGTGCACTGTGTACAGGTGAGAAAGGATATGGTTACAA
AGGATGCTCCTTCCACCGTATTATTAAAGATTTTATGATCCAGGGAGGGG
ACTTCACTGAGGGAGATGGAACTGGAGGCATCAGTATTTATGGTTCCAGC
TTTGAAGATGAGAGCTTTGTCTTGAAGCATGTTGGA
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