FC869302

Overview
NameFC869302
Unique NameFC869302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:127..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.502e-59
Identity = 103/205 (50.24%), Postives = 149/205 (72.68%), Query Frame = 3
Query:   96 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 710
            +K H+N++VIGHVD GKST  G L+   G +D++ I+  E+ A ++ K S KYA++LD+LK ERERG+TI++   +FET K++ T+IDAPGHRDF+KNMITG SQAD A+L++ +  G +EAG+S +GQTREH +LA T+G+ Q+I   NKMD T P Y + R+ EIV +V  ++K  G++  KV FVP+    G+N+ +RS N+
Sbjct:    3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFLDEKTIKEAEEAAKKLGKESEKYAFLLDRLKEERERGVTINLTFMRFETKKFFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSAEGQTREHIILAKTMGINQVIVAVNKMDLTDPPYDEKRFKEIVDQVGKFMKSFGFDMNKVKFVPVVAPTGENITQRSENM 207          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.110e-58
Identity = 110/208 (52.88%), Postives = 145/208 (69.71%), Query Frame = 3
Query:   87 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 710
            M  EK HIN+ VIGH+D GKSTT G L+Y+ G +   +IE+++KEA    K SF +AWV+D LK ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AV+++ +  G  E       QT+EH  L+ TLG+KQ+I   NKMDA    Y +AR++++  +V + LK VG NP+ V F+PIS FEGDN+ + S  +
Sbjct:    1 MATEKPHINLAVIGHIDHGKSTTVGRLMYEAGAVPAHIIEQYKKEAESKGKGSFAFAWVMDNLKEERERGITIDIAHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVIVVAAPDGVME-------QTKEHVFLSKTLGIKQLIVAVNKMDAA--NYDEARFNQVKSDVGALLKMVGTNPDTVKFIPISAFEGDNITKNSDKM 199          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 9.400e-58
Identity = 109/208 (52.40%), Postives = 148/208 (71.15%), Query Frame = 3
Query:   87 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 710
            M  +K H+N++ IGHVD GKST  G L+++ G I   +IE + KEA +  K +F++AWV+D+ K ERERG+TID+A  KFET KYY T+IDAPGHRDF+KNMITGTSQAD A+L+I +  G    G+ +  QTREHA LA TLGV Q++   NKMDAT P +S+ R++E+  +    LK +GY  +   FVPISG++GDN+ + S N+
Sbjct:    1 MASQKPHLNLITIGHVDHGKSTLVGRLLFEHGEIPAHIIEEYRKEAEQKGKATFEFAWVMDRFKEERERGVTIDLAHRKFETDKYYFTLIDAPGHRDFVKNMITGTSQADAAILVISAREG---EGVME--QTREHAFLARTLGVPQIVVAINKMDATEPPFSEKRFNEVKADAEKLLKTIGY--KDATFVPISGYKGDNVTKPSPNM 201          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.228e-57
Identity = 108/207 (52.17%), Postives = 144/207 (69.57%), Query Frame = 3
Query:   87 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTN 707
            M  EK H+N+ VIGH+D GKSTT G L+++ G +   +IE F KEA    K SF++AWV+D LK ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD A+L++ +  G  E       QT+EH  L+ TLG+ Q+I   NKMDA   KY + RY+E+ +++S  LK VGY P+ + F+P+S F GDN+ ++S N
Sbjct:    1 MAAEKPHMNLAVIGHIDHGKSTTVGRLLFETGTVPPHIIESFRKEAESKGKGSFEFAWVMDSLKEERERGITIDIAHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAALLVVAAPDGVME-------QTKEHVFLSRTLGINQLIIGINKMDAA--KYDEKRYNEVKEQLSQLLKMVGYKPDDISFIPMSAFVGDNIAKKSEN 198          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.603e-57
Identity = 102/205 (49.76%), Postives = 148/205 (72.20%), Query Frame = 3
Query:   96 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 710
            +K H+N++VIGHVD GKST  G L+   G ID++ ++  E+ A ++ K S KYA+++D+LK ERERG+TI+++  +FET KY+ TVIDAPGHRDF+KNMITG SQAD A+L++ +  G +EAG+S +GQTREH +L+ T+G+ Q+I   NKMD     Y + R+ EIV  VS ++K  G++  KV FVP+   +GDN+  +ST +
Sbjct:    3 QKPHLNLIVIGHVDHGKSTLIGRLLMDRGFIDEKTVKEAEEAAKKLGKDSEKYAFLMDRLKEERERGVTINLSFMRFETRKYFFTVIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSAEGQTREHIILSKTMGINQVIVAINKMDLADTPYDEKRFKEIVDTVSKFMKSFGFDMNKVKFVPVVAPDGDNVTHKSTKM 207          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57
Identity = 101/205 (49.27%), Postives = 146/205 (71.22%), Query Frame = 3
Query:   96 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 710
            +K H+N++VIGHVD GKST  G L+   G +D++ I+  E+ A ++ K S KYA++LD+LK ERERG+TI++   +FET KY+ T+IDAPGHRDF+KNMITG SQAD A+L + +  G FE+G+S +GQTREH +LA T+G+ Q+I    KMD   P Y + RY+EI + +  ++K  G++  KV F+PI    G+N+ +RS N+
Sbjct:    3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFLDEKTIKEAEEAAKKLGKESEKYAFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILAVSARKGEFESGMSLEGQTREHIILAKTMGLNQVIVAITKMDVAEPPYDQKRYNEIKETIEKFMKSFGFDMSKVKFIPIVSITGENVTKRSENM 207          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.093e-57
Identity = 105/205 (51.22%), Postives = 143/205 (69.76%), Query Frame = 3
Query:   87 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS 701
            M  +K H+N+ VIGH+D GKST  G L+Y  G +   +IE++++EA +  K SF +AWV+D LK ERERGITIDIA  +F+T K+Y TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA    YS+ARY E+V++VS  LK +G+ P ++PF+P S F GDN+++ S
Sbjct:    1 MAADKPHMNLAVIGHIDHGKSTFVGRLMYDAGAVPAHIIEKYKEEAKQKGKESFAFAWVMDSLKEERERGITIDIAHKRFDTDKFYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHIFLSRTLGINQLIVAINKMDAV--DYSEARYKEVVEQVSGILKMIGFKPSEIPFIPTSAFHGDNIMKLS 196          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.093e-57
Identity = 107/205 (52.20%), Postives = 141/205 (68.78%), Query Frame = 3
Query:   87 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS 701
            M  +K H+N+ VIGH+D GKST  G L+Y  G +   VIE++++EA +  K SF +AWV+D LK ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   +YS+ RY E+V++VS  LK +G+ P  +PFVP S F GDN++  S
Sbjct:    1 MAADKPHMNLAVIGHIDHGKSTFVGRLMYDAGAVPAHVIEKYKEEAKQKGKESFAFAWVMDSLKEERERGITIDIAHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHIFLSRTLGINQLIVAINKMDAV--EYSEKRYKEVVEQVSGILKMIGFKPGDIPFVPTSAFYGDNVVNHS 196          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.958e-57
Identity = 104/205 (50.73%), Postives = 143/205 (69.76%), Query Frame = 3
Query:   87 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS 701
            M  +K H+N+ VIGH+D GKST  G L+Y+ G +   +IE++++EA +  K SF +AWV+D LK ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD A+L++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   +YS+A+Y E+V++VS  LK +G+ P  +PF+P S F GDN+ + S
Sbjct:    1 MAADKPHMNLAVIGHIDHGKSTLVGRLMYEAGAVPAHIIEKYKEEAKQKGKESFAFAWVMDSLKEERERGITIDIAHKRFDTPKYYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVM-------AQTKEHIFLSRTLGINQLIIAINKMDAV--EYSEAKYKEVVEQVSGLLKMIGFKPANIPFIPTSAFMGDNITKLS 196          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.958e-57
Identity = 101/205 (49.27%), Postives = 142/205 (69.27%), Query Frame = 3
Query:   96 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL 710
            +K H+N+ +IGHVD GKST TG L+ + G +D++     E EA ++ K  FKYAW++D+LK ERERG+TI+     FET KY+ T+ID PGHRDF+KNMI G SQAD A+L++ +  G FE+G+   GQTREH  LA+TLG++ +I   NKMD     Y + RY++I  E+S  LK + Y+  KVPF+P+S   GDN+  +S+N+
Sbjct:   13 KKPHLNLAIIGHVDHGKSTLTGRLLLETGYVDEKAFAELEAEAKKLGKEDFKYAWIMDRLKEERERGVTIEAMHVGFETPKYFFTIIDLPGHRDFVKNMIVGASQADAALLVVSARPGEFESGVGPQGQTREHLFLAWTLGIRNLIVAVNKMDVV--NYDQKRYEQIKGELSKILKILRYDVNKVPFIPVSAVRGDNIKVKSSNM 215          
The following BLAST results are available for this feature:
BLAST of FC869302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_SULTO8.502e-5950.24Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_METHJ1.110e-5852.88Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_THEVO9.400e-5852.40Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_METMJ1.228e-5752.17Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_SULAC1.603e-5749.76Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METS52.094e-5749.27Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_METMA6.093e-5751.22Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METBF6.093e-5752.20Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_METAC7.958e-5750.73Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_CALMQ7.958e-5749.27Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionC31010G03EF AbioticL1 Citrus clementina cDNA clone C31010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869302 ID=FC869302; Name=FC869302; organism=Citrus clementina; type=EST; length=714bp
ATACACTCTCCCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGA
ATATCATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAA
GACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGA
CCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTG
ATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAA
ATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTA
CCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACC
GTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGG
TACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTG
GTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTG
CTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGAT
GGACGCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGA
AGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTC
CCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTC
TACCAACCTTGACT
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