FC869302

Overview
NameFC869302
Unique NameFC869302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU1_MYXXD (Elongation factor Tu 1 OS=Myxococcus xanthus (strain DK 1622) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGD 683
            + K H+NI  IGHVD GK++ T  +                K  A+    +F    ++DK   ERERGITI  +  +++T+  +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P   +   EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDLIDKAPEERERGITISTSHVEYQTSNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDDIPIIPGSALKALEGD 182          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: CYSN_METEP (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium extorquens (strain PA1) GN=cysN PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 63/202 (31.19%), Postives = 107/202 (52.97%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMI 692
            + K  +  +  G VD GKST  G L++    I    +   ++++ +   +  +   A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          Q+R HALL   LG++++    NKMD     +S+ +++ IV    ++   + +   +V  +P+S   GDN++
Sbjct:   20 QNKEVLRFITCGSVDDGKSTLIGRLLHDTKQIFDDQVTALQRDSRKHGTQGGEVDLALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADLAVILVDARHG-------LTRQSRRHALLVSLLGIRRVALAINKMDLV--GWSQDKFEAIVSGFQAFAAPLNFT--EVRAIPLSAKNGDNVV 210          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_THEM4 (Elongation factor Tu OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 66/189 (34.92%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 659
            + K H+N+  IGH+D GK+T T  +   L    +     +E+               +DK   E+ERGITI+IA  ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D       +   D +  EV   L K  +  + +P +
Sbjct:    8 RSKPHLNVGTIGHIDHGKTTLTAAITKYLSLFGRADYTPYEQ---------------IDKAPEEKERGITINIAHIEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKTDMVD---DEELVDLVEMEVRELLNKYEFPGDDLPVI 171          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 66/200 (33.00%), Postives = 98/200 (49.00%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGD 683
            + K H+NI  IGHVD GK++ T  +                K  A+    +F     +DK   ERERGITI  A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P   +   EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDQIDKAPEERERGITISTAHVEYQTKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDSIPIIPGSALKALEGD 182          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_PROVI (Elongation factor Tu OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 67/200 (33.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD 683
            ++K H+NI  IGHVD GK+T T  +   L             ++   + R F     +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L + G+  + +P +    +   +GD
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVLA------------KSGMADAREFGD---IDKAPEERERGITISTAHVEYQTVKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPEL----LELVEMELRELLTEYGFPGDDIPIIKGSALKALDGD 181          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_DICDI (Elongation factor Tu, mitochondrial OS=Dictyostelium discoideum GN=tufm PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 659
            + K H+N+  IGHVD GK+T T  +                K  ++    +FK    +DK   E+ RGITI  +  ++E+   +   ID PGH+ +IKNMITG +Q D A+L++ +  G  E       QTREH +L+  +G+  ++   NKMD   P        EIV+ EV   L + G+N ++ PFV
Sbjct:   34 RTKPHVNVGTIGHVDHGKTTLTAAIT---------------KTLSDRGLANFKSYAQIDKSPEEKARGITITASHIEYESATRHYAHIDCPGHQHYIKNMITGAAQMDGAILVVSAPDGPQE-------QTREHIILSREVGIPALVVFLNKMDNADPDLV-----EIVEMEVRELLSQYGFNGDETPFV 196          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 66/188 (35.11%), Postives = 96/188 (51.06%), Query Frame = 3
Query:   99 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 659
            K H+NI  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK D    +   A   E+V+ EV   L K  +  +++PFV
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNMVVFLNKED----QIDDADLLELVELEVRELLSKYDFPGDQIPFV 171          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 66/189 (34.92%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 659
            + K H+NI  IGHVD GK+T T  +   L              A E   ++F Y  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D           D +  EV   L + G+  +  P V
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITTIL--------------AKEGKAKAFNYEEI-DKAPEEKERGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEYIVVFLNKADQVD---DPELIDLVEMEVRELLNEYGFPGDDTPIV 171          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 58/189 (30.69%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 659
            + K H+N+  IGHVD GK+T T  +   L  + +   +R+++               +D    ER RGITI+ A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  E+   L K  +  +++P +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITMTLAALGQATAKRYDE---------------IDAAPEERARGITINTAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPSLVVFLNKVDMVD---DEELLELVELEIRELLSKYDFPGDEIPII 171          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_STRU0 (Elongation factor Tu OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 71/204 (34.80%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIE 695
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPTSVNQPK---DYASI-DAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
The following BLAST results are available for this feature:
BLAST of FC869302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_MYXXD1.086e-2132.50Elongation factor Tu 1 OS=Myxococcus xanthus (stra... [more]
CYSN_METEP1.086e-2131.19Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
EFTU_THEM41.418e-2134.92Elongation factor Tu OS=Thermosipho melanesiensis ... [more]
EFTU_STIAU1.418e-2133.00Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]
EFTU_PROVI1.418e-2133.50Elongation factor Tu OS=Prosthecochloris vibriofor... [more]
EFTU_DICDI1.418e-2134.21Elongation factor Tu, mitochondrial OS=Dictyosteli... [more]
EFTU_CYAPA1.418e-2135.11Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU_CLOAB1.418e-2134.92Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_SYNJA1.852e-2130.69Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_STRU01.852e-2134.80Elongation factor Tu OS=Streptococcus uberis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31010G03EF AbioticL1 Citrus clementina cDNA clone C31010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869302 ID=FC869302; Name=FC869302; organism=Citrus clementina; type=EST; length=714bp
ATACACTCTCCCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGA
ATATCATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAA
GACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGA
CCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTG
ATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAA
ATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTA
CCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACC
GTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGG
TACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTG
GTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTG
CTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGAT
GGACGCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGA
AGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTC
CCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTC
TACCAACCTTGACT
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