FC869302

Overview
NameFC869302
Unique NameFC869302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:127..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 60/195 (30.77%), Postives = 98/195 (50.26%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFE 677
            + K H+N+  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D       +   + +  E+   L +  +  ++VP +  SG +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITMTLAAQGKAQARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLARQVGVPSIVVFLNKVDMVD---DEELLELVELELRELLNEYEFPGDEVPIIRGSGLK 177          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_RICPA (Elongation factor Tu OS=Rickettsia parkeri GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 66/211 (31.28%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTN 707
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DSDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN 190          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_RICMO (Elongation factor Tu OS=Rickettsia montana GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 66/211 (31.28%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTN 707
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DSDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN 190          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 61/189 (32.28%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 659
            + K H+NI  IGHVD GK+T T  +                K  +E    +F     +D+   ER RGITI  A  +++T K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D           + +  E+   L + G++ +  P +
Sbjct:   32 RSKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLSEKGGANFLDYGSIDRAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHLVVFVNKVDTID---DPEMLELVEMEMRELLSQYGFDGDNTPVI 195          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 62/189 (32.80%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 659
            + K H NI  IGHVD GK+T T  +   L  +       +++               +DK   E+ERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LL   +G+  ++   NK+D    K      +E ++E+ +  K   Y  +K P V
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAITITLAELGGGKAVAYDQ---------------IDKAPEEKERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLGRQVGIPAIVVYLNKVDQVDDKDMIELVEEEIRELLTSYK---YPGDKTPIV 171          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 62/189 (32.80%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 659
            + K H+NI  IGHVD GK+T T  +   L G  +   + F++               +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLAGKGQAEFKAFDQ---------------IDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIV 171          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_NOVAD (Elongation factor Tu OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 70/210 (33.33%), Postives = 100/210 (47.62%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEG--DNMIERSTN 707
            + K H NI  IGHVD GK+T T  +                K  AE     F     +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   L    +  + +P V    ++  EG  DN+ + S N
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAIT---------------KVLAEQGGAEFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLARQVGVPALVVYMNKVDQVD---DEEILELVELEVRELLSSYDFPGDDIPIVKGSALAALEGRDDNIGKDSIN 192          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_MYCVP (Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 71/201 (35.32%), Postives = 107/201 (53.23%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGD 683
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ E+ P V +S     EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEELIELVEMEVRELLAAQDFD-EEAPVVKVSALKALEGD 183          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA9 (Elongation factor Tu OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 68/199 (34.17%), Postives = 101/199 (50.75%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGD 683
            + K H+NI  IGHVD GK+T T         I K + +++    EA+  ++        +D    E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D    +      +  V+E+ S     G N   V    +   EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYPDLNEASAFDQ--------IDNAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDMVDDEELLELVEMEVRELLSSQDFDGDNAPVVRVSALKALEGD 184          
BLAST of FC869302 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 62/189 (32.80%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   93 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 659
            + K H+N+  IGHVD GK+T T  + + L      V   +++               +DK   ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           + +  EV   L +  +  +++P V
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITFCLAKAGGAVPTAYDQ---------------IDKAPEERERGITIATAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDQVD---DPELLELVEMEVRELLTEYEFPGDEIPIV 171          
The following BLAST results are available for this feature:
BLAST of FC869302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_THEEB1.200e-2030.77Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_RICPA1.200e-2031.28Elongation factor Tu OS=Rickettsia parkeri GN=tuf ... [more]
EFTU_RICMO1.200e-2031.28Elongation factor Tu OS=Rickettsia montana GN=tuf ... [more]
EFTU_PICGU1.200e-2032.28Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_PELUB1.200e-2032.80Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]
EFTU_PELPD1.200e-2032.80Elongation factor Tu OS=Pelobacter propionicus (st... [more]
EFTU_NOVAD1.200e-2033.33Elongation factor Tu OS=Novosphingobium aromaticiv... [more]
EFTU_MYCVP1.200e-2035.32Elongation factor Tu OS=Mycobacterium vanbaalenii ... [more]
EFTU_MYCA91.200e-2034.17Elongation factor Tu OS=Mycobacterium abscessus (s... [more]
EFTU_MOOTA1.200e-2032.80Elongation factor Tu OS=Moorella thermoacetica (st... [more]

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Properties
Property NameValue
Genbank descriptionC31010G03EF AbioticL1 Citrus clementina cDNA clone C31010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869302 ID=FC869302; Name=FC869302; organism=Citrus clementina; type=EST; length=714bp
ATACACTCTCCCAATTTCCGAAGGGCGGCGAGAGAGAACCATTTTCGCGA
ATATCATTTTAATAAGGTTTTTTCTAGATTTGCCTAATGGGTAAGGAGAA
GACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGA
CCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTG
ATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAA
ATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTA
CCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACC
GTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGG
TACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGTG
GTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTG
CTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGAT
GGACGCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGA
AGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTC
CCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTC
TACCAACCTTGACT
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