FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869306_ssr46 microsatellite FC869306_ssr46:46..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9501 contig Ccv1_Contig9501:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.851e-68
Identity = 123/218 (56.42%), Postives = 166/218 (76.15%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK EK+GEGTYG VYRAR+K T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     +YLVFEY+D DLKK++ S  +  +N  +  +KS +YQ+ +GVA+CH H +LHRDLKP NLL+DR+T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS  YST VDMWSV CIFAE+V +  LFPGDSE+
Sbjct:    1 MEQYEKEEKIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMHHG-NIVRLHDVIHSEKR-----IYLVFEYLDLDLKKFMDSCPEFAKNPTL--IKSYLYQILRGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.724e-68
Identity = 120/218 (55.05%), Postives = 166/218 (76.15%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+EK+GEGTYG VY+AR++ T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     LYLVFEY+D DLKK++ S  +  ++     VK  +YQ+ +G+A+CH H +LHRDLKP NLL+DR+T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST VD+WSV CIFAE+V +  LFPGDSE+
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHG-NIVRLQDVVHSEKR-----LYLVFEYLDLDLKKHMDSCPEFSQD--PRLVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_HUMAN (Cell division protein kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 1.083e-67
Identity = 124/218 (56.88%), Postives = 171/218 (78.44%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ F+K+EK+GEGTYG VY+AR K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  IP+  +KS ++QL +G+AFCH H +LHRDLKP NLL++ +   +K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTAVD+WS+ CIFAE+VT+ ALFPGDSE+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEG-AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI 209          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.848e-67
Identity = 122/218 (55.96%), Postives = 170/218 (77.98%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD F+K+EK+GEGTYG VY+A+ + TG++VALKK RL  + EGVP T +RE+S+L+ L + P++VRL+DV   + K     LYLVFE++  DLKKY+ S    G  +P++ +KS ++QL +GV+FCH H ++HRDLKP NLL++ +   +K+AD GLARAF +P++ YTHE++TLWYRAPE+LLGS  Y+TAVD+WS+ CIFAE+VT+ ALFPGDSE+
Sbjct:    1 MDMFQKVEKIGEGTYGVVYKAKNRETGQLVALKKIRLDLEMEGVPSTAIREISLLKEL-KHPNIVRLLDVVHNERK-----LYLVFEFLSQDLKKYMDS--TPGSELPLHLIKSYLFQLLQGVSFCHSHRVIHRDLKPQNLLIN-ELGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGSKFYTTAVDIWSIGCIFAEMVTRKALFPGDSEI 209          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_CRIGR (Cell division protein kinase 2 OS=Cricetulus griseus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.848e-67
Identity = 123/218 (56.42%), Postives = 172/218 (78.90%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ F+K+EK+GEGTYG VY+A+ K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  IP+  +KS ++QL +G+AFCH H +LHRDLKP NLL++ +  ++K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTAVD+WS+ CIFAE+VT+ ALFPGDSE+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASAVTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEG-SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI 209          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_RAT (Cell division protein kinase 2 OS=Rattus norvegicus GN=Cdk2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.152e-67
Identity = 122/218 (55.96%), Postives = 172/218 (78.90%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ F+K+EK+GEGTYG VY+A+ K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  +P+  +KS ++QL +G+AFCH H +LHRDLKP NLL++ +  ++K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTAVD+WS+ CIFAE+VT+ ALFPGDSE+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASALTG--LPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEG-SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI 209          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_BOVIN (Cell division protein kinase 2 OS=Bos taurus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.152e-67
Identity = 123/218 (56.42%), Postives = 171/218 (78.44%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ F+K+EK+GEGTYG VY+A+ K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  IP+  +KS ++QL +G+AFCH H +LHRDLKP NLL++    ++K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTAVD+WS+ CIFAE+VT+ ALFPGDSE+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINADG-SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI 209          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.152e-67
Identity = 120/218 (55.05%), Postives = 166/218 (76.15%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+EK+GEGTYG VY+AR++ T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     LYLVFEY+D DLKK++ S  +  ++     VK  +YQ+  G+A+CH H +LHRDLKP NLL+DR+T +LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST VD+WSV CIFAE+V +  LFPGDSE+
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHR-NIVRLQDVVHSEKR-----LYLVFEYLDLDLKKHMDSSPEFVKD--PRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRRPLFPGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.152e-67
Identity = 120/218 (55.05%), Postives = 167/218 (76.61%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+EK+GEGTYG VY+A +KAT + +ALKK RL ++DEGVP T +RE+S+L+ ++   ++VRL DV   + +     +YLVFEY+D DLKK++ S  +  +N  +  +KS +YQ+  GVA+CH H +LHRDLKP NLL+DR+T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLG+  YST VD+WSV CIFAE+V +  LFPGDSE+
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKALDKATNETIALKKIRLEQEDEGVPSTAIREISLLKEMNHG-NIVRLHDVVHSEKR-----IYLVFEYLDLDLKKFMDSCPEFAKNPTL--IKSYLYQILHGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARQYSTPVDVWSVGCIFAEMVNQKPLFPGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_MESAU (Cell division protein kinase 2 OS=Mesocricetus auratus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.377e-67
Identity = 123/218 (56.42%), Postives = 171/218 (78.44%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ F+K+EK+GEGTYG VY+A+ K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE +  DLKK++ +   TG  IP+  +KS ++QL +G+AFCH H +LHRDLKP NLL++ +  ++K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTAVD+WS+ CIFAE+VT+ ALFPGDSE+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFELLHQDLKKFMDASAVTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEG-SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI 209          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKA1_ORYSJ2.851e-6856.42Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2A_ANTMA3.724e-6855.05Cell division control protein 2 homolog A OS=Antir... [more]
CDK2_HUMAN1.083e-6756.88Cell division protein kinase 2 OS=Homo sapiens GN=... [more]
CDK3_HUMAN1.848e-6755.96Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
CDK2_CRIGR1.848e-6756.42Cell division protein kinase 2 OS=Cricetulus grise... [more]
CDK2_RAT3.152e-6755.96Cell division protein kinase 2 OS=Rattus norvegicu... [more]
CDK2_BOVIN3.152e-6756.42Cell division protein kinase 2 OS=Bos taurus GN=CD... [more]
CDC2_VIGAC3.152e-6755.05Cell division control protein 2 homolog OS=Vigna a... [more]
CDC2_MAIZE3.152e-6755.05Cell division control protein 2 homolog OS=Zea may... [more]
CDK2_MESAU5.377e-6756.42Cell division protein kinase 2 OS=Mesocricetus aur... [more]

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Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
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