FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK6_MOUSE (Cell division protein kinase 6 OS=Mus musculus GN=Cdk6 PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.349e-46
Identity = 99/218 (45.41%), Postives = 146/218 (66.97%), Query Frame = 1
Query:   85 FEKLEKVGEGTYGKVYRARE-KATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLS--RDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +E + ++GEG YGKV++AR+ K  G+ VALK+ R+   +EG+P +T+REV++LR L     P+VVRL DV      +  T L LVFE++D DL  Y+    + G  +P  T+K +M+QL +G+ F H H ++HRDLKP N+L+   +  +K+AD GLAR ++  +   T  ++TLWYRAPEVLL S+ Y+T VD+WSV CIFAE+  +  LF G S++
Sbjct:   13 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTSEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPG--VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILV-TSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQSS-YATPVDLWSVGCIFAEMFRRKPLFRGSSDV 225          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK10_RAT (Cell division protein kinase 10 OS=Rattus norvegicus GN=Cdk10 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.349e-46
Identity = 100/220 (45.45%), Postives = 145/220 (65.91%), Query Frame = 1
Query:   85 FEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVN----TVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSELH 732
            FEKL ++GEGTYG VYRAR+  T +IVALKK R+ ++ +G+P ++LRE+++L  L R P++V L +V  G + E    ++LV  Y + DL   +       EN+P       VK ++ Q+ +G+ + H   I+HRDLK  NLLM  K   +K AD GLARA+ +P+K  T +++TLWYRAPE+LLG+T  +T++DMW+V CI AEL+    L PG SE+H
Sbjct:   37 FEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRL-RHPNIVELKEVVVGNHLES---IFLVMGYCEQDLASLL-------ENMPTPFSEAQVKCILLQVLRGLQYLHRSFIIHRDLKVSNLLMTDKGC-VKTADFGLARAYGVPVKPMTPKVVTLWYRAPELLLGTTTQTTSIDMWAVGCILAELLAHKPLLPGTSEIH 244          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK6_HUMAN (Cell division protein kinase 6 OS=Homo sapiens GN=CDK6 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.068e-46
Identity = 99/218 (45.41%), Postives = 146/218 (66.97%), Query Frame = 1
Query:   85 FEKLEKVGEGTYGKVYRARE-KATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLS--RDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +E + ++GEG YGKV++AR+ K  G+ VALK+ R+   +EG+P +T+REV++LR L     P+VVRL DV      +  T L LVFE++D DL  Y+    + G  +P  T+K +M+QL +G+ F H H ++HRDLKP N+L+   +  +K+AD GLAR ++  +   T  ++TLWYRAPEVLL S+ Y+T VD+WSV CIFAE+  +  LF G S++
Sbjct:   13 YECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPG--VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILV-TSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQSS-YATPVDLWSVGCIFAEMFRRKPLFRGSSDV 225          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKD2_ARATH (Cyclin-dependent kinase D-2 OS=Arabidopsis thaliana GN=CDKD-2 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.232e-46
Identity = 98/221 (44.34%), Postives = 136/221 (61.54%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRS---FRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +D + + + +GEGTYG VY+A +  TGK VA+KK RL    EGV  T LRE+ +L+ L+  PH+V L+D            L+LVFEYM TDL+  IR    F   G+      +KS M    KG+A+CH   +LHRD+KP+NLL+    + LK+AD GLAR F  P +++TH++   WYRAPE+L GS  Y   VD+W+  CIFAEL+ +    PG +E+
Sbjct:   10 VDRYLRRQILGEGTYGVVYKATDTKTGKTVAVKKIRLGNQKEGVNFTALREIKLLKELNH-PHIVELIDAFPHDGS-----LHLVFEYMQTDLEAVIRDRNIFLSPGD------IKSYMLMTLKGLAYCHKKWVLHRDMKPNNLLIGENGL-LKLADFGLARLFGSPNRRFTHQVFATWYRAPELLFGSRQYGAGVDVWAAGCIFAELLLRRPFLPGSTEI 217          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKC1_ORYSJ (Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.925e-46
Identity = 105/230 (45.65%), Postives = 144/230 (62.61%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDV---------KQGQNKEG---RTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIK-KYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE 726
            +D FEKLE++GEGTYG+VY ARE  T +IVALKK R+  + EG P T +RE+ IL+ L    +V++L ++         +QG+   G   +  +Y+VFEYMD DL        + G    V  +K  M QL  G+ +CH + +LHRD+K  NLL+D +   LK+AD GLAR+F+       T+ ++TLWYR PE+LLGST Y  AVDMWSV CIFAEL+    + PG +E
Sbjct:   22 VDCFEKLEQIGEGTYGQVYMARETETQEIVALKKIRMDNEREGFPITAIREIKILKKLHHQ-NVIQLKEIVTSPGPERDEQGKPIHGNKYKGSIYMVFEYMDHDLTGLA---DRPGMRFTVPQIKCYMKQLLTGLHYCHINQVLHRDIKGSNLLIDNEG-NLKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLNGKPILPGKNE 246          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.166e-45
Identity = 104/230 (45.22%), Postives = 144/230 (62.61%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDV---------KQGQNKEG---RTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIK-KYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE 726
            +D FEKLE++GEGTYG+VY A+E  T +IVALKK R+  + EG P T +RE+ IL+ L    +V++L ++         +QG+  EG   +  +Y+VFEYMD DL        + G    V  +K  M QL  G+ +CH + +LHRD+K  NLL+D +   LK+AD GLAR+F+       T+ ++TLWYR PE+LLGST Y  AVDMWSV CIFAEL+    +  G +E
Sbjct:   22 VDCFEKLEQIGEGTYGQVYMAKETETNEIVALKKIRMDNEREGFPITAIREIKILKKLHHQ-NVIQLKEIVTSPGPERDEQGKPIEGNKYKGSIYMVFEYMDHDLTGLA---DRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEG-NLKLADFGLARSFSSDHNGNLTNRVITLWYRPPELLLGSTRYGPAVDMWSVGCIFAELLNGKPILTGKNE 246          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKC2_ARATH (Cyclin-dependent kinase C-2 OS=Arabidopsis thaliana GN=CDKC-2 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.522e-45
Identity = 102/229 (44.54%), Postives = 145/229 (63.32%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDV---------KQGQ--NKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLP-IKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE 726
            +D FEKLE++GEGTYG+VY A+E  TG+IVALKK R+  + EG P T +RE+ IL+ L  + +V+ L ++          QG+  N + +  +Y+VFEYMD DL        + G    V  +K  M QL  G+ +CH + +LHRD+K  NLL+D +   LK+AD GLAR+++       T+ ++TLWYR PE+LLG+T Y  A+DMWSV CIFAEL+    + PG +E
Sbjct:   23 VDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHE-NVIHLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLA---DRPGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEG-NLKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKYGPAIDMWSVGCIFAELLNGKPILPGKTE 246          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKC1_ARATH (Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.522e-45
Identity = 102/229 (44.54%), Postives = 146/229 (63.76%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDV---------KQGQ--NKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLP-IKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE 726
            +D FEKLE++GEGTYG+VY A+E  TG+IVALKK R+  + EG P T +RE+ IL+ L  + +V++L ++          QG+  N + +  +Y+VFEYMD DL        + G    V  +K  M QL  G+ +CH + +LHRD+K  NLL+D +   LK+AD GLAR+++       T+ ++TLWYR PE+LLG+T Y  A+DMWSV CIFAEL+    + PG +E
Sbjct:   23 VDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHE-NVIQLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLA---DRPGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEG-NLKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKYGPAIDMWSVGCIFAELLHAKPILPGKNE 246          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: PPK23_SCHPO (Serine/threonine-protein kinase ppk23 OS=Schizosaccharomyces pombe GN=ppk23 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.868e-45
Identity = 102/225 (45.33%), Postives = 141/225 (62.67%), Query Frame = 1
Query:   55 EKKARMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            E K+   +D +E LEK+ EG+YG VYR  +K+T  +VALKK +   +  G P T+LRE+  L  +  D ++V L  V  G++ +    +YLV E+M+ DLK  + +     E+   + VK+LM QL    AF H H  LHRDLKP NLLM+  T  +K+AD GLAR  + P    T  ++TLWYRAPE+LLG+  Y   +DMWS+ CIFAE++T+T LF G SEL
Sbjct:   64 ELKSCNSIDDYEILEKIEEGSYGIVYRGLDKSTNTLVALKKIKFDPNGIGFPITSLREIESLSSIRHD-NIVELEKVVVGKDLKD---VYLVMEFMEHDLKTLLDNMP---EDFLQSEVKTLMLQLLAATAFMHHHWYLHRDLKPSNLLMNN-TGEIKLADFGLARPVSEPKSSLTRLVVTLWYRAPELLLGAPSYGKEIDMWSIGCIFAEMITRTPLFSGKSEL 280          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKD1_ARATH (Cyclin-dependent kinase D-1 OS=Arabidopsis thaliana GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.868e-45
Identity = 94/224 (41.96%), Postives = 143/224 (63.84%), Query Frame = 1
Query:   58 KKARMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            ++ + V D + K E +G+GTYG V++A +   G+ VA+KK RL ++ EGV  T LRE+ +L+ L + PH++ L+D     +KE    L++VFE+M+TDL+  IR        +    VKS +  + KG+ +CHG  +LHRD+KP+NLL+      LK+AD GLAR F  P +K+TH++   WYRAPE+L G+  Y  AVD+W+  CIFAEL+ +     G+S++
Sbjct:    2 EQPKKVADRYLKREVLGQGTYGVVFKATDTKNGETVAIKKIRLGKEKEGVNVTALREIKLLKEL-KHPHIIELIDAFP--HKEN---LHIVFEFMETDLEAVIRD---RNLYLSPGDVKSYLQMILKGLEYCHGKWVLHRDMKPNNLLIGPNGQ-LKLADFGLARIFGSPGRKFTHQVFARWYRAPELLFGAKQYDGAVDVWAAGCIFAELLLRRPFLQGNSDI 215          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK6_MOUSE2.349e-4645.41Cell division protein kinase 6 OS=Mus musculus GN=... [more]
CDK10_RAT2.349e-4645.45Cell division protein kinase 10 OS=Rattus norvegic... [more]
CDK6_HUMAN3.068e-4645.41Cell division protein kinase 6 OS=Homo sapiens GN=... [more]
CDKD2_ARATH5.232e-4644.34Cyclin-dependent kinase D-2 OS=Arabidopsis thalian... [more]
CDKC1_ORYSJ8.925e-4645.65Cyclin-dependent kinase C-1 OS=Oryza sativa subsp.... [more]
CDKC2_ORYSJ1.166e-4545.22Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDKC2_ARATH1.522e-4544.54Cyclin-dependent kinase C-2 OS=Arabidopsis thalian... [more]
CDKC1_ARATH1.522e-4544.54Cyclin-dependent kinase C-1 OS=Arabidopsis thalian... [more]
PPK23_SCHPO9.868e-4545.33Serine/threonine-protein kinase ppk23 OS=Schizosac... [more]
CDKD1_ARATH9.868e-4541.96Cyclin-dependent kinase D-1 OS=Arabidopsis thalian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
back to top