FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.415e-43
Identity = 97/224 (43.30%), Postives = 140/224 (62.50%), Query Frame = 1
Query:   67 RMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENI---PVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            + V D + K E +GEGTYG V++A +  TG  VA+KK RL +  EGV  T LRE+ +L+ L +D +++ L+D    +       L+LVFE+M+TDL+  IR       NI   P +T KS +  + KG+AFCH   +LHRD+KP+NLL+      LK+AD GLAR F  P + +TH++   WYRAPE+L G+  Y +AVD+W+  CIFAEL+ +     G S++
Sbjct:   13 KRVADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKEL-KDSNIIELIDAFPYKGN-----LHLVFEFMETDLEAVIRD-----RNIVLSPADT-KSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQ-LKLADFGLARIFGSPERNFTHQVFARWYRAPELLFGTKQYGSAVDIWAAGCIFAELLLRRPFLQGSSDI 223          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKL1_DANRE (Cyclin-dependent kinase-like 1 OS=Danio rerio GN=cdkl1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.072e-43
Identity = 93/222 (41.89%), Postives = 138/222 (62.16%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMD----TDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+ K+GEG+YG V++ R K TG+IVA+KK    EDD  +    LRE+ +L+ L + P++V LM+V + + K     L+LVFEY D     +L +Y R        +P + VKS+++Q  + V FCH    +HRD+KP N+L+  K   +K+ D G AR  T P   YT  + T WYRAPE+L+G T Y   VD+W+V C+FAEL++   L+PG S++
Sbjct:    1 MEKYEKISKIGEGSYGVVFKCRNKDTGQIVAIKKFVESEDDPIIKKIALREIRMLKQL-KHPNLVNLMEVFRRKRK-----LHLVFEYCDHTVLNELDRYPRG-------VPEHMVKSIIWQTLQAVNFCHKQNCIHRDVKPENILIT-KHQVIKLCDFGFARILTGPCDYYTDCVATRWYRAPELLVGDTQYGPPVDVWAVGCVFAELLSGAPLWPGKSDV 208          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK7_MOUSE (Cell division protein kinase 7 OS=Mus musculus GN=Cdk7 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 7.072e-43
Identity = 92/218 (42.20%), Postives = 141/218 (64.68%), Query Frame = 1
Query:   85 FEKLEKVGEGTYGKVYRAREKATGKIVALKKTRL---HEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +EKL+ +GEG +  VY+AR+K T +IVA+KK +L    E  +G+  T LRE+ +L+ LS  P+++ L+D    ++      + LVF++M+TDL+  I+        +  + +K+ M    +G+ + H H ILHRDLKP+NLL+D   + LK+AD GLA++F  P + YTH+++T WYRAPE+L G+  Y   VDMW+V CI AEL+ +    PGDS+L
Sbjct:   12 YEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSN-----ISLVFDFMETDLEVIIKDNSLV---LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGV-LKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL 219          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK7_HUMAN (Cell division protein kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.072e-43
Identity = 92/218 (42.20%), Postives = 141/218 (64.68%), Query Frame = 1
Query:   85 FEKLEKVGEGTYGKVYRAREKATGKIVALKKTRL---HEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +EKL+ +GEG +  VY+AR+K T +IVA+KK +L    E  +G+  T LRE+ +L+ LS  P+++ L+D    ++      + LVF++M+TDL+  I+        +  + +K+ M    +G+ + H H ILHRDLKP+NLL+D   + LK+AD GLA++F  P + YTH+++T WYRAPE+L G+  Y   VDMW+V CI AEL+ +    PGDS+L
Sbjct:   12 YEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSN-----ISLVFDFMETDLEVIIKDNSLV---LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGV-LKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL 219          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK12_HUMAN (Cell division protein kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.072e-43
Identity = 96/237 (40.51%), Postives = 143/237 (60.34%), Query Frame = 1
Query:   37 ERVKRKEKKARMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQN-----KEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAF-TLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            ER + +    +  +D F+ +  +GEGTYG+VY+AR+K TG++VALKK RL  + EG P T +RE+ ILR L     VV + ++   +      K+ +   YLVFEYMD DL   + S      +   + +KS M QL +G+ +CH    LHRD+K  N+L++     +K+AD GLAR + +   + YT++++TLWYR PE+LLG   Y+ A+D+WS  CI  EL TK  +F  + EL
Sbjct:  711 ERRQTESDWGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH-RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGL---VHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNSGQ-IKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLEL 942          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK12_RAT (Cell division protein kinase 12 OS=Rattus norvegicus GN=Cdk12 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.206e-42
Identity = 95/237 (40.08%), Postives = 143/237 (60.34%), Query Frame = 1
Query:   37 ERVKRKEKKARMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQN-----KEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAF-TLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            ER + +    +  +D F+ +  +GEGTYG+VY+A++K TG++VALKK RL  + EG P T +RE+ ILR L     VV + ++   +      K+ +   YLVFEYMD DL   + S      +   + +KS M QL +G+ +CH    LHRD+K  N+L++     +K+AD GLAR + +   + YT++++TLWYR PE+LLG   Y+ A+D+WS  CI  EL TK  +F  + EL
Sbjct:  707 ERRQTESDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVHQ-SVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGL---VHFSEDHIKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLNNSGQ-IKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLEL 938          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK12_MOUSE (Cell division protein kinase 12 OS=Mus musculus GN=Cdk12 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.206e-42
Identity = 95/237 (40.08%), Postives = 143/237 (60.34%), Query Frame = 1
Query:   37 ERVKRKEKKARMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQN-----KEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAF-TLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            ER + +    +  +D F+ +  +GEGTYG+VY+A++K TG++VALKK RL  + EG P T +RE+ ILR L     VV + ++   +      K+ +   YLVFEYMD DL   + S      +   + +KS M QL +G+ +CH    LHRD+K  N+L++     +K+AD GLAR + +   + YT++++TLWYR PE+LLG   Y+ A+D+WS  CI  EL TK  +F  + EL
Sbjct:  707 ERRQTESDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVHQ-SVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGL---VHFSEDHIKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLNNSGQ-IKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLEL 938          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKE1_ARATH (Cyclin-dependent kinase E-1 OS=Arabidopsis thaliana GN=CDKE-1 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.575e-42
Identity = 97/221 (43.89%), Postives = 143/221 (64.71%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKI-VALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFR-QTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLM---DRKTMTLKIADLGLARAFTLPIKKYTHE--ILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPG 717
            +  +  + K+GEGTYG V+ AR K   K  +A+KK +  +D +GV PT +RE+ +LR +S + +VV+L++V           LYL F+Y + DL + IR  R + G ++   TVKSL++QL  G+ + H + I+HRDLKP N+L+     +   +KIAD GLAR +  P+K  +    ++T+WYRAPE+LLGS HY++AVDMW+V CIFAEL+T   LF G
Sbjct:   22 LQQYNLVGKIGEGTYGLVFLARTKTPPKRPIAIKKFKQSKDGDGVSPTAIREIMLLREISHE-NVVKLVNV---HINFADMSLYLAFDYAEYDLYEIIRHHRDKVGHSLNTYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGDAEEHGIVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGSKHYTSAVDMWAVGCIFAELLTLKPLFQG 238          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK4_RAT (Cell division protein kinase 4 OS=Rattus norvegicus GN=Cdk4 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.058e-42
Identity = 101/224 (45.09%), Postives = 139/224 (62.05%), Query Frame = 1
Query:   70 MVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDE---GVPPTTLREVSILRMLS--RDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE 726
            M    +E + ++G G YG VY+AR+  +G  VALK  R+        G+P +T+REV++LR L     P+VVRLMDV      +    + LVFE++D DL+ Y+      G  +PV T+K LM Q   G+ F H + I+HRDLKP N+L+     T+K+AD GLAR ++  +   T  ++TLWYRAPEVLL ST Y+T VDMWSV CIFAE+  +  LF G+SE
Sbjct:    1 MATTRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGAAGGGLPVSTVREVALLRRLEAFEHPNVVRLMDVCATSRTDRDIKVTLVFEHIDQDLRTYLDKAPPPG--LPVETIKDLMRQFLSGLDFLHANCIVHRDLKPENILV-TSNGTVKLADFGLARIYSYQM-ALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLFCGNSE 219          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK4_MOUSE (Cell division protein kinase 4 OS=Mus musculus GN=Cdk4 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.058e-42
Identity = 101/224 (45.09%), Postives = 139/224 (62.05%), Query Frame = 1
Query:   70 MVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDE---GVPPTTLREVSILRMLS--RDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE 726
            M    +E + ++G G YG VY+AR+  +G  VALK  R+        G+P +T+REV++LR L     P+VVRLMDV      +    + LVFE++D DL+ Y+      G  +PV T+K LM Q   G+ F H + I+HRDLKP N+L+     T+K+AD GLAR ++  +   T  ++TLWYRAPEVLL ST Y+T VDMWSV CIFAE+  +  LF G+SE
Sbjct:    1 MAATRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGAAGGGLPVSTVREVALLRRLEAFEHPNVVRLMDVCATSRTDRDIKVTLVFEHIDQDLRTYLDKAPPPG--LPVETIKDLMRQFLSGLDFLHANCIVHRDLKPENILV-TSNGTVKLADFGLARIYSYQM-ALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLFCGNSE 219          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKD1_ORYSJ5.415e-4343.30Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKL1_DANRE7.072e-4341.89Cyclin-dependent kinase-like 1 OS=Danio rerio GN=c... [more]
CDK7_MOUSE7.072e-4342.20Cell division protein kinase 7 OS=Mus musculus GN=... [more]
CDK7_HUMAN7.072e-4342.20Cell division protein kinase 7 OS=Homo sapiens GN=... [more]
CDK12_HUMAN7.072e-4340.51Cell division protein kinase 12 OS=Homo sapiens GN... [more]
CDK12_RAT1.206e-4240.08Cell division protein kinase 12 OS=Rattus norvegic... [more]
CDK12_MOUSE1.206e-4240.08Cell division protein kinase 12 OS=Mus musculus GN... [more]
CDKE1_ARATH1.575e-4243.89Cyclin-dependent kinase E-1 OS=Arabidopsis thalian... [more]
CDK4_RAT2.058e-4245.09Cell division protein kinase 4 OS=Rattus norvegicu... [more]
CDK4_MOUSE2.058e-4245.09Cell division protein kinase 4 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
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