FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKL4_MOUSE (Cyclin-dependent kinase-like 4 OS=Mus musculus GN=Cdkl4 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.687e-42
Identity = 88/218 (40.37%), Postives = 140/218 (64.22%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EKL K+GEG+YG V++ R K++G++VA+KK    EDD  V    LRE+ +L+ L + P++V L++V + + K     ++LVFEY D  L   +    +    +    +KS+++Q  + + FCH H  +HRD+KP N+L+ ++ M +KI D G AR   +P   YT  + T WYRAPE+L+G T Y ++VD+W+V C+FAEL+T   L+PG S++
Sbjct:    1 MEKYEKLAKIGEGSYGVVFKCRNKSSGQVVAIKKFVESEDDRVVRKIALREIRMLKQL-KHPNLVNLIEVFRRKRK-----MHLVFEYCDHTL---LNELERNPNGVSDGVIKSVLWQTLQALNFCHKHNCIHRDVKPENILITKQGM-IKICDFGFARIL-IPGDAYTDYVATRWYRAPELLVGDTKYGSSVDVWAVGCVFAELLTGQPLWPGKSDV 207          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK8_DICDI (Probable cyclin-dependent kinase 8 OS=Dictyostelium discoideum GN=cdk8 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.584e-42
Identity = 89/212 (41.98%), Postives = 138/212 (65.09%), Query Frame = 1
Query:  100 KVGEGTYGKVYRAREKAT-GKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLM---DRKTMTLKIADLGLARAFTLPIKKYTHE--ILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPG 717
            ++G GTYG VY+A +K      VA+KK R  ++ EG+  T  RE+ +L+ LS + ++V+L+DV      +   +LYL+F+Y + DL   I+  R+ G +    T+KSL++Q+  G+ + H + ++HRDLKP N+L+    ++  T+KI D GLAR F  P+K       ++T+WYR+PE+LLGS HY+ AVD+W++ CIFAEL+T   LFPG
Sbjct:   49 EIGSGTYGMVYKADDKKRPNNKVAVKKFRSTKEGEGLSLTAYREIGLLKELSNE-NIVKLLDVCLNPKDK---LLYLIFDYAEFDLFGIIKYHRENGSHFSDATIKSLIWQVLNGIHYLHSNWVIHRDLKPSNILVMGEGKECGTVKIGDFGLARIFQSPLKPLNENGVVVTIWYRSPELLLGSKHYTRAVDIWAIGCIFAELITTKPLFPG 256          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK4_HUMAN (Cell division protein kinase 4 OS=Homo sapiens GN=CDK4 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.584e-42
Identity = 100/224 (44.64%), Postives = 139/224 (62.05%), Query Frame = 1
Query:   70 MVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEG---VPPTTLREVSILRMLS--RDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE 726
            M    +E + ++G G YG VY+AR+  +G  VALK  R+     G   +P +T+REV++LR L     P+VVRLMDV      +    + LVFE++D DL+ Y+      G  +P  T+K LM Q  +G+ F H + I+HRDLKP N+L+     T+K+AD GLAR ++  +   T  ++TLWYRAPEVLL ST Y+T VDMWSV CIFAE+  +  LF G+SE
Sbjct:    1 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPG--LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILV-TSGGTVKLADFGLARIYSYQM-ALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGCIFAEMFRRKPLFCGNSE 219          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKE1_ORYSJ (Cyclin-dependent kinase E-1 OS=Oryza sativa subsp. japonica GN=CDKE-1 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.987e-42
Identity = 97/232 (41.81%), Postives = 147/232 (63.36%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKAT-----------GKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVN--TVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLM---DRKTMTLKIADLGLARAFTLPIKKYTHE--ILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPG 717
            +  +E + K+GEGTYG V+ AR K +           G  +A+KK +  ++ +GV PT +RE+ +LR ++ + +VV+L++V           LYL F+Y + DL + IR  R+   N+P+N  TVKSL++QL  G+ + H + I+HRDLKP N+L+     +   +KIAD GLAR +  P+K  +    ++T+WYRAPE+LLG+ HY++AVDMW+V CIFAEL+T   LF G
Sbjct:   16 LQQYELVGKIGEGTYGLVFLARLKQSHPHAAAGVGRRGSPIAIKKFKQSKEGDGVSPTAIREIMLLREINHE-NVVKLVNV---HINHADMSLYLAFDYAEHDLYEIIRHHREK-LNLPINPYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGIIKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQG 242          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK7_RAT (Cell division protein kinase 7 (Fragment) OS=Rattus norvegicus GN=Cdk7 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.987e-42
Identity = 92/217 (42.40%), Postives = 139/217 (64.06%), Query Frame = 1
Query:   88 EKLEKVGEGTYGKVYRAREKATGKIVALKKTRL---HEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            EKL+ +GEG +  VY+AR+K T +IVA+KK +L    E  +G+  T LRE+ +L+ LS  P+++ L+D    ++      + LVF++M+TDL+  I+        +  + +K+ M    +G+ + H H ILHRDLKP+NLL+D   + LK+AD GLA++F  P   YTH+++T WYRAPE+L G+  Y   VDMW+V CI AEL+ +    PGDS+L
Sbjct:    5 EKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSN-----ISLVFDFMETDLEVIIKDNSLV---LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGV-LKLADFGLAKSFGSPNWAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL 211          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK11_DICDI (PITSVRE serine/threonine protein-kinase cdk11 OS=Dictyostelium discoideum GN=cdk11 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.987e-42
Identity = 94/241 (39.00%), Postives = 151/241 (62.66%), Query Frame = 1
Query:   37 ERVKRKEKK----------ARMVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            E  K KEK+          A   +D F+KL  + EG +G VY A++K T +IVALKK ++  + EG+P T++RE+ +L  L  D ++V++ ++  G+N      +++  E++D DL+  +   ++    +P + +K+L+ QL  GV++ H + ++HRDLK  NLL   K + LKIAD GLAR +  P+K  +  ++TLWYRAPE+LL +  Y+ A+D+WSV CIFAE+++K  L  G SE+
Sbjct:   26 ENFKNKEKQYFSSLRSPYSACRSVDCFKKLYTINEGAFGVVYCAQDKETEEIVALKKIKMEREREGIPITSVREIKVLMELKHD-NIVQIKEIVLGKNINS---IFMAMEFIDHDLRGLMEVIKKPF--LP-SEIKTLIQQLLNGVSYMHDNWVIHRDLKTANLLYTNKGV-LKIADFGLAREYGSPLKPLSKGVVTLWYRAPELLLDTEIYTPAIDIWSVGCIFAEIISKEVLLQGSSEI 258          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK7_XENLA (Cell division protein kinase 7 OS=Xenopus laevis GN=cdk7 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.021e-41
Identity = 92/218 (42.20%), Postives = 141/218 (64.68%), Query Frame = 1
Query:   85 FEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLH---EDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +EKL+ +GEG +  VY+AR+K T +IVA+KK +L    E ++G+  T LRE+ +L+ LS  P+++ L+D    ++      + LVF++M+TDL+  I+    T   +    +KS M    +G+ + H   ILHRDLKP+NLL+D   + LK+AD GLA++F  P + YTH+++T WYR+PE+L G+  Y   VDMW+V CI AEL+ +    PGDS+L
Sbjct:   18 YEKLDFLGEGQFATVYKARDKNTDRIVAIKKIKLGHRAEANDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSN-----ISLVFDFMETDLEVIIKD---TSLVLTPAHIKSYMLMTLQGLEYLHHLWILHRDLKPNNLLLDENGV-LKLADFGLAKSFGSPNRIYTHQVVTRWYRSPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL 225          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CTK1_SCHPO (CTD kinase subunit alpha OS=Schizosaccharomyces pombe GN=lsk1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.334e-41
Identity = 93/217 (42.86%), Postives = 136/217 (62.67%), Query Frame = 1
Query:   82 AFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFT-LPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            A+EK++++GEGTYGKVY+A    TG +VALK+ RL ++ +G P TT+REV IL+ L R  ++VRL+++   ++      +Y+VFEYMD DL   + + +    +     +K L  Q+ + +A+ H  G+LHRD+K  N+L++     LK AD GLAR  T      YT+ ++TLW+R PE+LLG T Y TAVD+WS  CI  EL T    F G  E+
Sbjct:  276 AYEKIDQIGEGTYGKVYKAINTVTGDLVALKRIRLEQEKDGFPITTVREVKILQRL-RHKNIVRLLEIMVEKSS-----VYMVFEYMDHDLTGVLLNSQL---HFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNG-DLKFADFGLARFNTSSKSANYTNRVITLWFRPPELLLGETAYDTAVDIWSAGCIVMELFTGKPFFQGRDEI 482          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKL1_HUMAN (Cyclin-dependent kinase-like 1 OS=Homo sapiens GN=CDKL1 PE=2 SV=5)

HSP 1 Score: 169.859 bits (429), Expect = 1.334e-41
Identity = 84/218 (38.53%), Postives = 139/218 (63.76%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+ K+GEG+YG V++ R + TG+IVA+KK    EDD  +    LRE+ +L+ L + P++V L++V + + +     L+LVFEY D  +   +  +++    +P + VKS+ +Q  + V FCH H  +HRD+KP N+L+ + ++ +K+ D G AR    P   YT  + T WYR+PE+L+G T Y   VD+W++ C+FAEL++   L+PG S++
Sbjct:    1 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQL-KHPNLVNLLEVFRRKRR-----LHLVFEYCDHTVLHELDRYQR---GVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSV-IKLCDFGFARLLAGPSDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDV 208          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKL1_MOUSE (Cyclin-dependent kinase-like 1 OS=Mus musculus GN=Cdkl1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.619e-41
Identity = 83/218 (38.07%), Postives = 139/218 (63.76%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+ K+GEG+YG V++ R + TG+IVA+K+    EDD  +    LRE+ +L+ L + P++V L++V + + +     L+LVFEY D  +   +  +++    +P   VK++ +Q  + V FCH H  +HRD+KP N+L+ +++  +K+ D G AR  T P   YT  + T WYR+PE+L+G T Y   VD+W++ C+FAEL++   L+PG S++
Sbjct:    1 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQL-KHPNLVNLLEVFRRKRR-----LHLVFEYCDHTVLHELDRYQR---GVPEPLVKNITWQTLQAVNFCHKHNCIHRDVKPENILITKQS-AIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDV 208          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKL4_MOUSE2.687e-4240.37Cyclin-dependent kinase-like 4 OS=Mus musculus GN=... [more]
CDK8_DICDI4.584e-4241.98Probable cyclin-dependent kinase 8 OS=Dictyosteliu... [more]
CDK4_HUMAN4.584e-4244.64Cell division protein kinase 4 OS=Homo sapiens GN=... [more]
CDKE1_ORYSJ5.987e-4241.81Cyclin-dependent kinase E-1 OS=Oryza sativa subsp.... [more]
CDK7_RAT5.987e-4242.40Cell division protein kinase 7 (Fragment) OS=Rattu... [more]
CDK11_DICDI5.987e-4239.00PITSVRE serine/threonine protein-kinase cdk11 OS=D... [more]
CDK7_XENLA1.021e-4142.20Cell division protein kinase 7 OS=Xenopus laevis G... [more]
CTK1_SCHPO1.334e-4142.86CTD kinase subunit alpha OS=Schizosaccharomyces po... [more]
CDKL1_HUMAN1.334e-4138.53Cyclin-dependent kinase-like 1 OS=Homo sapiens GN=... [more]
CDKL1_MOUSE6.619e-4138.07Cyclin-dependent kinase-like 1 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
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