FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869306_ssr46 microsatellite FC869306_ssr46:46..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9501 contig Ccv1_Contig9501:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.023e-67
Identity = 119/218 (54.59%), Postives = 166/218 (76.15%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+EK+GEGTYG VY+AR++ T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     LYLVFEY+D DLKK++ S  +  ++     VK  +YQ+  G+A+CH H +LHRDLKP NLL+DR+T +LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST VD+WSV C+FAE+V +  LFPGDSE+
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTDETIALKKIRLEQEDEGVPSTAIREISLLKEMQHR-NIVRLQDVVHSEKR-----LYLVFEYLDLDLKKHMDSSPEFVKD--PRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCLFAEMVNRRPLFPGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_CARAU (Cell division protein kinase 2 OS=Carassius auratus GN=cdk2 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.198e-66
Identity = 122/218 (55.96%), Postives = 171/218 (78.44%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M++F+K+EK+GEGTYG VY+A+ K TG+ VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L DV   +NK     LYLVFE++  DLK+++ S   TG ++P+  VKS ++QL +G+AFCH H +LHRDLKP NLL++ +   +K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTAVD+WS+ CIFAE++T+ ALFPGDSE+
Sbjct:    1 MESFQKVEKIGEGTYGVVYKAKNKVTGETVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLHDVIHTENK-----LYLVFEFLHQDLKRFMDSSTVTGISLPL--VKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAQG-EIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMITRKALFPGDSEI 209          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC22_MEDSA (Cell division control protein 2 homolog 2 OS=Medicago sativa GN=CDC2B PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.198e-66
Identity = 117/218 (53.67%), Postives = 165/218 (75.69%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+EK+GEGTYG VY+AR++AT + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     LYLVFEY+D DLKK++ S  +  ++     +K  +YQ+  G+A+CH H +LHRDLKP NLL+DR +  +K+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST VD+WSV CIFAE++ +  LFPGDSE+
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRATNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHR-NIVRLQDVVHSEKR-----LYLVFEYLDLDLKKFMDSSPEFAKD--QRQIKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSSNAVKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKA2_ORYSJ (Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.485e-66
Identity = 118/218 (54.13%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ +EK+EK+GEGTYG VY+ + + T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   +       +YLVFEY+D DLKK++ S      +     VKS +YQ+ +G+A+CH H +LHRDLKP NLL+DR+T +LK+AD GLARAF +P++ +THE++TLWYRAPE+LLG+ HYST VDMWSV CIFAE+V +  LFPGDSE+
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKGKHRHTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHR-NIVRLQDVVHKEK-----CIYLVFEYLDLDLKKHMDSSPDFKNH---RIVKSFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARHYSTPVDMWSVGCIFAEMVNQKPLFPGDSEI 209          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_XENLA (Cell division protein kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 3.854e-65
Identity = 121/218 (55.50%), Postives = 168/218 (77.06%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ F+K+EK+GEGTYG VY+AR + TG+IVALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE+++ DLKK++     +G  I +  VKS ++QL +G+AFCH H +LHRDLKP NLL++     +K+AD GLARAF +P++ +THE++TLWYRAPE+LLG   YSTAVD+WS+ CIFAE++T+ ALFPGDSE+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKARNRETGEIVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLNQDLKKFMDGSNISG--ISLALVKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINSDG-AIKLADFGLARAFGVPVRTFTHEVVTLWYRAPEILLGCKFYSTAVDIWSLGCIFAEMITRRALFPGDSEI 209          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_SCHPO (Cell division control protein 2 OS=Schizosaccharomyces pombe GN=cdc2 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.033e-65
Identity = 120/222 (54.05%), Postives = 166/222 (74.77%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRD---PHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGE-NIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ ++K+EK+GEGTYG VY+AR K +G+IVA+KK RL ++ EGVP T +RE+S+L+ ++ +    + VRL+D+   ++K     LYLVFE++D DLKKY+    +TG  ++    V+   YQL  GV FCH   I+HRDLKP NLL+D++   LK+AD GLAR+F +P++ YTHEI+TLWYRAPEVLLGS HYST VD+WSV CIFAE++ ++ LFPGDSE+
Sbjct:    1 MENYQKVEKIGEGTYGVVYKARHKLSGRIVAMKKIRLEDESEGVPSTAIREISLLKEVNDENNRSNCVRLLDILHAESK-----LYLVFEFLDMDLKKYMDRISETGATSLDPRLVQKFTYQLVNGVNFCHSRRIIHRDLKPQNLLIDKEG-NLKLADFGLARSFGVPLRNYTHEIVTLWYRAPEVLLGSRHYSTGVDIWSVGCIFAEMIRRSPLFPGDSEI 216          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_DICDI (Cell division control protein 2 homolog OS=Dictyostelium discoideum GN=cdk1 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.913e-64
Identity = 128/218 (58.72%), Postives = 162/218 (74.31%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +  ++KLEK+GEGTYGKVY+A+EKATG++VALKK RL  +D+GVP T LRE+S+L+ +   P+VV L DV   QN+     LYLVFEY+D DLKKY+ S       +    +KS +YQL KG+A+ HGH ILHRDLKP NLL+DR+   LK+AD GLARA ++P++ YTHEI+TLWYRAPEVLLGS  YS  VDMWSV CIF E++ K  LF GD E+
Sbjct:    7 LSRYQKLEKLGEGTYGKVYKAKEKATGRMVALKKIRL--EDDGVPSTALREISLLKEVPH-PNVVSLFDVLHCQNR-----LYLVFEYLDQDLKKYMDSVPALCPQL----IKSYLYQLLKGLAYSHGHRILHRDLKPQNLLIDRQG-ALKLADFGLARAVSIPVRVYTHEIVTLWYRAPEVLLGSKSYSVPVDMWSVGCIFGEMLNKKPLFSGDCEI 211          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2A_XENLA (Cell division control protein 2-A OS=Xenopus laevis GN=cdc2-A PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.261e-64
Identity = 119/218 (54.59%), Postives = 161/218 (73.85%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD + K+EK+GEGTYG VY+ R KATG++VA+KK RL  ++EGVP T +RE+S+L+ L   P++V L+DV    ++     LYL+FE++  DLKKY+ S   +G+ I    VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GLARAF +P++ YTHE++TLWYRAPEVLLGS  YST VD+WS+  IFAE+ TK  LF GDSE+
Sbjct:    1 MDEYTKIEKIGEGTYGVVYKGRHKATGQVVAMKKIRLENEEEGVPSTAIREISLLKELQH-PNIVCLLDVLMQDSR-----LYLIFEFLSMDLKKYLDSI-PSGQYIDTMLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDSKGV-IKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSVRYSTPVDVWSIGTIFAEIATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC21_MEDSA (Cell division control protein 2 homolog 1 (Fragment) OS=Medicago sativa GN=CDC2A PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.268e-64
Identity = 116/214 (54.21%), Postives = 159/214 (74.30%), Query Frame = 1
Query:   88 EKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            E +EK+GEGTYG VY+AR++ T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV     +     LYLVFEY+D DLKK++ S  +  ++     VK  +YQ+  G+A+CH H +LHRDLKP NLL+DR+T +LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST VD+WSV CIFAE+  +  L PGDSE+
Sbjct:    2 ENVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHR-NIVRLQDVVHSDKR-----LYLVFEYLDLDLKKHMDSSPEFIKD--PRQVKMFLYQMLCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMANRRPLSPGDSEI 207          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_CARAU (Cell division control protein 2 homolog OS=Carassius auratus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.492e-64
Identity = 121/218 (55.50%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD + K+EK+GEGTYG VY+ R K TG++VA+KK RL  ++EGVP T +RE+S+L+ L   P+VVRL+DV   ++K     LYLVFE++  DLKKY+ S   +G+ +    VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GLARAF +P++ YTHE++TLWYRAPEVLLG++ YST VD+WS+  IFAEL TK  LF GDSE+
Sbjct:    1 MDDYLKIEKIGEGTYGVVYKGRNKTTGQVVAMKKIRLESEEEGVPSTAVREISLLKELQH-PNVVRLLDVLMQESK-----LYLVFEFLSMDLKKYLDSI-PSGQFMDPMLVKSYLYQILEGILFCHCRRVLHRDLKPQNLLIDNKGV-IKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGASRYSTPVDVWSIGTIFAELATKKPLFHGDSEI 210          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC2_VIGUN7.023e-6754.59Cell division control protein 2 homolog OS=Vigna u... [more]
CDK2_CARAU1.198e-6655.96Cell division protein kinase 2 OS=Carassius auratu... [more]
CDC22_MEDSA1.198e-6653.67Cell division control protein 2 homolog 2 OS=Medic... [more]
CDKA2_ORYSJ3.485e-6654.13Cyclin-dependent kinase A-2 OS=Oryza sativa subsp.... [more]
CDK2_XENLA3.854e-6555.50Cell division protein kinase 2 OS=Xenopus laevis G... [more]
CDC2_SCHPO5.033e-6554.05Cell division control protein 2 OS=Schizosaccharom... [more]
CDC2_DICDI1.913e-6458.72Cell division control protein 2 homolog OS=Dictyos... [more]
CDC2A_XENLA4.261e-6454.59Cell division control protein 2-A OS=Xenopus laevi... [more]
CDC21_MEDSA7.268e-6454.21Cell division control protein 2 homolog 1 (Fragmen... [more]
CDC2_CARAU9.492e-6455.50Cell division control protein 2 homolog OS=Carassi... [more]

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Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
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