FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869306_ssr46 microsatellite FC869306_ssr46:46..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9501 contig Ccv1_Contig9501:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK5_DICDI (Cell division protein kinase 5 homolog OS=Dictyostelium discoideum GN=cdk5 PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.115e-63
Identity = 121/214 (56.54%), Postives = 159/214 (74.30%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPG 717
            M+ + K+EK+GEGTYG VY+A+ + TG+IVALK+ RL  +DEGVP T +RE+S+L+ L + P++VRL DV   + K     L LVFEY+D DLKKY+    + G  I   T+KS MYQL KGVAFCH H +LHRDLKP NLL++RK   LK+AD GLARAF +P++ Y+HE++TLWYRAP+VL+GS  YST +D+WS  CIFAE+ +   LFPG
Sbjct:    1 MEKYSKIEKLGEGTYGIVYKAKNRETGEIVALKRIRLDSEDEGVPCTAIREISLLKEL-KHPNIVRLHDVIHTERK-----LTLVFEYLDQDLKKYLD---ECGGEISKPTIKSFMYQLLKGVAFCHDHRVLHRDLKPQNLLINRKG-ELKLADFGLARAFGIPVRTYSHEVVTLWYRAPDVLMGSRKYSTPIDIWSAGCIFAEMASGRPLFPG 204          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2B_XENLA (Cell division control protein 2-B OS=Xenopus laevis GN=cdc2-B PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 2.115e-63
Identity = 119/218 (54.59%), Postives = 160/218 (73.39%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD + K+EK+GEGTYG VY+ R KATG++VA+KK RL  ++EGVP T +RE+S+L+ L   P++V L+DV    ++     LYL+FE++  DLKKY+ S   +G+ I    VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GLARAF +P++ YTHE++TLWYRA EVLLGS  YST VD+WSV  IFAE+ TK  LF GDSE+
Sbjct:    1 MDEYTKIEKIGEGTYGVVYKGRHKATGQVVAMKKIRLENEEEGVPSTAIREISLLKELQH-PNIVCLLDVLMQDSR-----LYLIFEFLSMDLKKYLDSI-PSGQYIDTMLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDNKGV-IKLADFGLARAFGIPVRVYTHEVVTLWYRASEVLLGSVRYSTPVDVWSVGTIFAEIATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_BOVIN (Cell division control protein 2 homolog OS=Bos taurus GN=CDC2 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.762e-63
Identity = 119/218 (54.59%), Postives = 160/218 (73.39%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R K TG++VA+KK RL  ++EGVP T +RE+S+L+ L R P++V L DV    ++     LYL+FE++  DLKKY+ S    G+ +  + VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K  T+K+AD GLARAF +PI+ YTHE++TLWYR+PEVLLGS  YST VD+WS+  IFAEL TK  LF GDSE+
Sbjct:    1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKEL-RHPNIVSLQDVLMQDSR-----LYLIFEFLSMDLKKYLDSI-PPGQFMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKG-TIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLU (Cell division control protein 2 homolog OS=Oryzias luzonensis GN=cdc2 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.711e-63
Identity = 120/218 (55.05%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R K+TG++VA+KK RL  ++EGVP T +REVS+L+ L + P+VVRL+DV   +++     LYL+FE++  DLKKY+ S   +G+ +    VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GLARAF +P++ YTHE++TLWYRAPEVLLGS  YST VD+WS   IFAEL TK  LF GDSE+
Sbjct:    1 MEDYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQEL-KHPNVVRLLDVLMQESR-----LYLIFEFLSMDLKKYLDSI-PSGQYMDPMLVKSYLYQILEGIYFCHRRRVLHRDLKPQNLLIDNKGV-IKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDVWSTGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLA (Cell division control protein 2 homolog OS=Oryzias latipes GN=cdc2 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.711e-63
Identity = 120/218 (55.05%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R K+TG++VA+KK RL  ++EGVP T +REVS+L+ L + P+VVRL+DV   +++     LYL+FE++  DLKKY+ S   +G+ +    VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GLARAF +P++ YTHE++TLWYRAPEVLLGS  YST VD+WS   IFAEL TK  LF GDSE+
Sbjct:    1 MEDYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQEL-KHPNVVRLLDVLMQESR-----LYLIFEFLSMDLKKYLDSI-PSGQYMDPMLVKSYLYQILEGIYFCHRRRVLHRDLKPQNLLIDNKGV-IKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDVWSTGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_ORYJA (Cell division control protein 2 homolog OS=Oryzias javanicus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.711e-63
Identity = 120/218 (55.05%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R K+TG++VA+KK RL  ++EGVP T +REVS+L+ L + P+VVRL+DV   +++     LYL+FE++  DLKKY+ S   +G+ +    VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GLARAF +P++ YTHE++TLWYRAPEVLLGS  YST VD+WS   IFAEL TK  LF GDSE+
Sbjct:    1 MEDYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQEL-KHPNVVRLLDVLMQESR-----LYLIFEFLSMDLKKYLDSI-PSGQYMDPMLVKSYLYQILEGIYFCHRRRVLHRDLKPQNLLIDNKGV-IKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDVWSTGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_HUMAN (Cell division control protein 2 homolog OS=Homo sapiens GN=CDC2 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.711e-63
Identity = 119/218 (54.59%), Postives = 159/218 (72.94%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R K TG++VA+KK RL  ++EGVP T +RE+S+L+ L R P++V L DV    ++     LYL+FE++  DLKKY+ S    G+ +  + VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K  T+K+AD GLARAF +PI+ YTHE +TLWYR+PEVLLGS  YST VD+WS+  IFAEL TK  LF GDSE+
Sbjct:    1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKEL-RHPNIVSLQDVLMQDSR-----LYLIFEFLSMDLKKYLDSI-PPGQYMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKG-TIKLADFGLARAFGIPIRVYTHEAITLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_PONAB (Cell division control protein 2 homolog OS=Pongo abelii GN=CDC2 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.152e-63
Identity = 118/218 (54.13%), Postives = 159/218 (72.94%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R K TG++V +KK RL  ++EGVP T +RE+S+L+ L R P++V L DV    ++     LYL+FE++  DLKKY+ S    G+ +  + VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K  T+K+AD GLARAF +PI+ YTHE++TLWYR+PEVLLGS  YST VD+WS+  IFAEL TK  LF GDSE+
Sbjct:    1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVTMKKIRLESEEEGVPSTAIREISLLKEL-RHPNIVSLQDVLMQDSR-----LYLIFEFLSMDLKKYLDSI-PPGQYMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKG-TIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_RAT (Cell division control protein 2 homolog OS=Rattus norvegicus GN=Cdc2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.035e-63
Identity = 119/218 (54.59%), Postives = 160/218 (73.39%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R + TG+IVA+KK RL  ++EGVP T +RE+S+L+ L R P++V L DV    ++     LYL+FE++  DLKKY+ S    G+ +  + VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K  T+K+AD GLARAF +PI+ YTHE++TLWYR+PEVLLGS  YST VD+WS+  IFAEL TK  LF GDSE+
Sbjct:    1 MEDYIKIEKIGEGTYGVVYKGRHRTTGQIVAMKKIRLESEEEGVPSTAIREISLLKEL-RHPNIVSLQDVLMQDSR-----LYLIFEFLSMDLKKYLDSI-PPGQFMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKG-TIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_ORYCU (Cell division control protein 2 homolog OS=Oryzias curvinotus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.049e-62
Identity = 119/218 (54.59%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R K+TG++VA+KK RL  ++EGVP T +REVS+L+ L + P+VVRL+DV   +++     LYL+FE++  DLKKY+ S   +G+ +    VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GL+RAF +P++ YTHE++TLWYRAPEVLLGS  YST VD+WS   IFAEL TK  LF GDSE+
Sbjct:    1 MEDYVKIEKIGEGTYGVVYKGRHKSTGQVVAMKKIRLESEEEGVPSTAVREVSLLQEL-KHPNVVRLLDVLMQESR-----LYLIFEFLSMDLKKYLDSI-PSGQYMDPMLVKSYLYQILEGIYFCHRRRVLHRDLKPQNLLIDNKGV-IKLADFGLSRAFGVPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDVWSTGTIFAELATKKPLFHGDSEI 210          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK5_DICDI2.115e-6356.54Cell division protein kinase 5 homolog OS=Dictyost... [more]
CDC2B_XENLA2.115e-6354.59Cell division control protein 2-B OS=Xenopus laevi... [more]
CDC2_BOVIN2.762e-6354.59Cell division control protein 2 homolog OS=Bos tau... [more]
CDC2_ORYLU4.711e-6355.05Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYLA4.711e-6355.05Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYJA4.711e-6355.05Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_HUMAN4.711e-6354.59Cell division control protein 2 homolog OS=Homo sa... [more]
CDC2_PONAB6.152e-6354.13Cell division control protein 2 homolog OS=Pongo a... [more]
CDC2_RAT8.035e-6354.59Cell division control protein 2 homolog OS=Rattus ... [more]
CDC2_ORYCU1.049e-6254.59Cell division control protein 2 homolog OS=Oryzias... [more]

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Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
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