FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869306_ssr46 microsatellite FC869306_ssr46:46..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9501 contig Ccv1_Contig9501:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK3_MOUSE (Cell division protein kinase 3 OS=Mus musculus GN=Cdk3 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.790e-62
Identity = 120/218 (55.05%), Postives = 164/218 (75.23%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD F+K+EK+GEGTYG VY+AR K TG++VALKK RL  + EGVP T +RE+S+L+ L + P++++L+DV   + K     LY+VFE++  DLK+++ S       +P+  VKS + QL +GV+FCH H ++HRDLKP NLL+D     +K+AD GLARAF +P++ YTHE++TLWYRAPE+LLGS  YSTAVD+ S+ CIFAE+VT  ALFPGDSE+
Sbjct:    1 MDVFQKVEKIGEGTYGVVYKARNKVTGQLVALKKIRLDLEAEGVPSTAVREISLLKEL-KHPNIIKLLDVVHREKK-----LYMVFEFLTQDLKRHMDS--SPTSELPLPVVKSYLAQLLEGVSFCHSHRVIHRDLKPQNLLLD-GLGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGSKFYSTAVDI-SIGCIFAEMVTGKALFPGDSEI 208          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_RANDY (Cell division control protein 2 homolog OS=Rana dybowskii GN=CDC2 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.790e-62
Identity = 117/218 (53.67%), Postives = 160/218 (73.39%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            MD + K+EK+GEGTYG VY+   KATG+IVA+KK RL  ++EGVP T +RE+S+L+ L   P++V L+DV    ++     LYL+FE++  DLKKY+ S   +G+ +    VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GLARAF +P++ YTHE++TLWYRAPEVLLGS  YST VD+WS+  IFAE+ +K  LF GDSE+
Sbjct:    1 MDEYAKIEKIGEGTYGVVYKGVHKATGQIVAMKKIRLENEEEGVPSTAIREISLLKELQH-PNIVCLLDVLMQDSR-----LYLIFEFLSMDLKKYLDSI-PSGQYLEAMLVKSYLYQILQGIIFCHARRVLHRDLKPQNLLIDSKGV-IKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSVRYSTPVDVWSIGTIFAEIASKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_MOUSE (Cell division control protein 2 homolog OS=Mus musculus GN=Cdc2 PE=1 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 3.053e-62
Identity = 118/218 (54.13%), Postives = 160/218 (73.39%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R + TG+IVA+KK RL  ++EGVP T +RE+S+L+ L R P++V L DV    ++     LYL+FE++  DLKKY+ S    G+ +  + VKS ++Q+ +G+ FCH   +LHRDLKP NLL+D K  T+K+AD GLARAF +PI+ YTHE++TLWYR+PEVLLGS  YST VD+WS+  IFAEL TK  LF GDSE+
Sbjct:    1 MEDYIKIEKIGEGTYGVVYKGRHRVTGQIVAMKKIRLESEEEGVPSTAIREISLLKEL-RHPNIVSLQDVLMQDSR-----LYLIFEFLSMDLKKYLDSI-PPGQFMDSSLVKSYLHQILQGIVFCHSRRVLHRDLKPQNLLIDDKG-TIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC28_CANAL (Cell division control protein 28 OS=Candida albicans GN=CDC28 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.802e-62
Identity = 117/216 (54.17%), Postives = 157/216 (72.69%), Query Frame = 1
Query:   85 FEKLEKVGEGTYGKVYRARE-KATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +++ EKVGEGTYG VY+A + K   ++VALKK RL  +DEGVP T +RE+S+L+ + +D ++VRL D+    + +    LYLVFE++D DLKKY+ S  Q G  +  N +K  M QL +G+  CH H +LHRDLKP NLL+D++   LK+AD GLARAF +P++ YTHE++TLWYRAPE+LLG   YST VDMWSV CIFAE+  +  LFPGDSE+
Sbjct:    7 YQRQEKVGEGTYGVVYKALDTKHNNRVVALKKIRLESEDEGVPSTAIREISLLKEM-KDDNIVRLYDIIHSDSHK----LYLVFEFLDLDLKKYMESIPQ-GVGLGANMIKRFMNQLIRGIKHCHSHRVLHRDLKPQNLLIDKEG-NLKLADFGLARAFGVPLRAYTHEVVTLWYRAPEILLGGKQYSTGVDMWSVGCIFAEMCNRKPLFPGDSEI 215          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_MOUSE (Cell division protein kinase 2 OS=Mus musculus GN=Cdk2 PE=1 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 3.376e-61
Identity = 113/205 (55.12%), Postives = 160/205 (78.05%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAEL 690
            M+ F+K+EK+GEGTYG VY+A+ K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  IP+  +KS ++QL +G+AFCH H +LHRDLKP NLL++ +  ++K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTAVD+WS+ CIFAE+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEG-SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEM 196          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_CHICK (Cell division control protein 2 homolog OS=Gallus gallus GN=CDC2 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.376e-61
Identity = 115/218 (52.75%), Postives = 159/218 (72.94%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ + K+EK+GEGTYG VY+ R K TG++VA+KK RL  ++EGVP T +RE+S+L+ L   P++V L DV     +     LYL+FE++  DLKKY+ +   +G+ +  + VKS +YQ+ +G+ FCH   +LHRDLKP NLL+D K + +K+AD GLARAF +P++ YTHE++TLWYR+PEVLLGS  YST VD+WS+  IFAEL TK  LF GDSE+
Sbjct:    1 MEDYTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELHH-PNIVCLQDVLMQDAR-----LYLIFEFLSMDLKKYLDTI-PSGQYLDRSRVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKGV-IKLADFGLARAFGIPVRVYTHEVVTLWYRSPEVLLGSALYSTPVDIWSIGTIFAELATKKPLFHGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_DROME (Cell division control protein 2 homolog OS=Drosophila melanogaster GN=cdc2 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.521e-61
Identity = 113/218 (51.83%), Postives = 157/218 (72.02%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ FEK+EK+GEGTYG VY+ R + TG+IVA+KK RL  DDEGVP T +RE+S+L+ L  + ++V L DV   +N+     +YL+FE++  DLKKY+ S     +++    V+S +YQ+   + FCH   +LHRDLKP NLL+D+  + +K+AD GL R+F +P++ YTHEI+TLWYRAPEVLLGS  YS  VD+WS+ CIFAE+ T+  LF GDSE+
Sbjct:    1 MEDFEKIEKIGEGTYGVVYKGRNRLTGQIVAMKKIRLESDDEGVPSTAIREISLLKELKHE-NIVCLEDVLMEENR-----IYLIFEFLSMDLKKYMDSL-PVDKHMESELVRSYLYQITSAILFCHRRRVLHRDLKPQNLLIDKSGL-IKVADFGLGRSFGIPVRIYTHEIVTLWYRAPEVLLGSPRYSCPVDIWSIGCIFAEMATRKPLFQGDSEI 210          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_AJECA (Cell division control protein 2 OS=Ajellomyces capsulata GN=CDC2 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.675e-60
Identity = 119/236 (50.42%), Postives = 162/236 (68.64%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKA-TGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQT----------GENIPVNT-------VKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ ++K+EK+GEGTYG VY+AR+     +IVALKK RL  +DEGVP T +RE+S+L+ +  DP++VRL+++      +    LYLVFE++D DLKKY+ +   +          G  + +N        VK  M QL +G+ +CH H +LHRDLKP NLL+DR+   LK+AD GLARAF +P++ YTHE++TLWYRAPE+LLG   YST VDMWSV  IFAE+ T+  LFPGDSE+
Sbjct:    1 MENYQKIEKIGEGTYGVVYKARDLTHPNRIVALKKIRLEAEDEGVPSTAIREISLLKEM-HDPNIVRLLNIVHADGHK----LYLVFEFLDLDLKKYMEALPVSEGGRGKALPDGSTLDMNRLGLGEAMVKKFMAQLVEGIRYCHSHRVLHRDLKPQNLLIDREG-NLKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGGRQYSTGVDMWSVGAIFAEMCTRKPLFPGDSEI 230          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC2_EMENI (Cell division control protein 2 OS=Emericella nidulans GN=nimX PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.875e-60
Identity = 119/235 (50.64%), Postives = 161/235 (68.51%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKA-TGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQT----GENIPVNT------------VKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            M+ ++K+EK+GEGTYG VY+ARE     +IVALKK RL  +DEGVP T +RE+S+L+ ++ DP++VRL+++      +    LYLVFE++D DLKKY+ +   +    G  +P  +            VK  M QL +G+ FCH H +LHRDLKP NLL+DR    LK+AD GLARAF +P++ YTHE++TLWYR+PE+LLG   YST VDMWS   IFAE+ T+  LFPGDSE+
Sbjct:    1 MENYQKIEKIGEGTYGVVYKARELTHPNRIVALKKIRLEAEDEGVPSTAIREISLLKEMN-DPNIVRLLNIVHADGHK----LYLVFEFLDLDLKKYMEALPVSEGGRGRALPDGSTLSRNLGLGDAMVKKFMAQLIEGIRFCHSHRVLHRDLKPQNLLIDRDG-NLKLADFGLARAFGVPLRTYTHEVVTLWYRSPEILLGGRQYSTGVDMWSCGAIFAEMCTRKPLFPGDSEI 229          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDC28_YEAST (Cell division control protein 28 OS=Saccharomyces cerevisiae GN=CDC28 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.367e-60
Identity = 116/218 (53.21%), Postives = 155/218 (71.10%), Query Frame = 1
Query:   85 FEKLEKVGEGTYGKVYRAREKATG---KIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +++LEKVGEGTYG VY+A +   G   ++VALKK RL  +DEGVP T +RE+S+L+ L +D ++VRL D+      +    LYLVFE++D DLK+Y+    +  + +  + VK  M QLCKG+A+CH H ILHRDLKP NLL++ K   LK+ D GLARAF +P++ YTHEI+TLWYRAPEVLLG   YST VD WS+ CIFAE+  +  +F GDSE+
Sbjct:    8 YKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEGVPSTAIREISLLKEL-KDDNIVRLYDIVHSDAHK----LYLVFEFLDLDLKRYMEGIPKD-QPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLIN-KDGNLKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGCIFAEMCNRKPIFSGDSEI 218          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDK3_MOUSE1.790e-6255.05Cell division protein kinase 3 OS=Mus musculus GN=... [more]
CDC2_RANDY1.790e-6253.67Cell division control protein 2 homolog OS=Rana dy... [more]
CDC2_MOUSE3.053e-6254.13Cell division control protein 2 homolog OS=Mus mus... [more]
CDC28_CANAL6.802e-6254.17Cell division control protein 28 OS=Candida albica... [more]
CDK2_MOUSE3.376e-6155.12Cell division protein kinase 2 OS=Mus musculus GN=... [more]
CDC2_CHICK3.376e-6152.75Cell division control protein 2 homolog OS=Gallus ... [more]
CDC2_DROME7.521e-6151.83Cell division control protein 2 homolog OS=Drosoph... [more]
CDC2_AJECA1.675e-6050.42Cell division control protein 2 OS=Ajellomyces cap... [more]
CDC2_EMENI4.875e-6050.64Cell division control protein 2 OS=Emericella nidu... [more]
CDC28_YEAST6.367e-6053.21Cell division control protein 28 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
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