FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869306_ssr46 microsatellite FC869306_ssr46:46..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9501 contig Ccv1_Contig9501:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CSK21_RAT (Casein kinase II subunit alpha OS=Rattus norvegicus GN=Csnk2a1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 63/217 (29.03%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   79 DAFEKLEKVGEGTYGKVYRA-----REKATGKIVA-LKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALF 711
            D ++ + K+G G Y +V+ A      EK   KI+  +KK ++            RE+ IL  L   P+++ L D+ +  +   RT   LVFE+++         F+Q  + +    ++  MY++ K + +CH  GI+HRD+KPHN+++D +   L++ D GLA  F  P ++Y   + + +++ PE+L+    Y  ++DMWS+ C+ A ++ +   F
Sbjct:   37 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIK-----------REIKILENLRGGPNIITLADIVK--DPVSRTPA-LVFEHVNNT------DFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF 232          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CSK21_MOUSE (Casein kinase II subunit alpha OS=Mus musculus GN=Csnk2a1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 63/217 (29.03%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   79 DAFEKLEKVGEGTYGKVYRA-----REKATGKIVA-LKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALF 711
            D ++ + K+G G Y +V+ A      EK   KI+  +KK ++            RE+ IL  L   P+++ L D+ +  +   RT   LVFE+++         F+Q  + +    ++  MY++ K + +CH  GI+HRD+KPHN+++D +   L++ D GLA  F  P ++Y   + + +++ PE+L+    Y  ++DMWS+ C+ A ++ +   F
Sbjct:   37 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIK-----------REIKILENLRGGPNIITLADIVK--DPVSRTPA-LVFEHVNNT------DFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF 232          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CSK21_HUMAN (Casein kinase II subunit alpha OS=Homo sapiens GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 63/217 (29.03%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   79 DAFEKLEKVGEGTYGKVYRA-----REKATGKIVA-LKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALF 711
            D ++ + K+G G Y +V+ A      EK   KI+  +KK ++            RE+ IL  L   P+++ L D+ +  +   RT   LVFE+++         F+Q  + +    ++  MY++ K + +CH  GI+HRD+KPHN+++D +   L++ D GLA  F  P ++Y   + + +++ PE+L+    Y  ++DMWS+ C+ A ++ +   F
Sbjct:   37 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIK-----------REIKILENLRGGPNIITLADIVK--DPVSRTPA-LVFEHVNNT------DFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF 232          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CSK21_CHICK (Casein kinase II subunit alpha OS=Gallus gallus GN=CSNK2A1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 63/217 (29.03%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   79 DAFEKLEKVGEGTYGKVYRA-----REKATGKIVA-LKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALF 711
            D ++ + K+G G Y +V+ A      EK   KI+  +KK ++            RE+ IL  L   P+++ L D+ +  +   RT   LVFE+++         F+Q  + +    ++  MY++ K + +CH  GI+HRD+KPHN+++D +   L++ D GLA  F  P ++Y   + + +++ PE+L+    Y  ++DMWS+ C+ A ++ +   F
Sbjct:   37 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIK-----------REIKILENLRGGPNIITLADIVK--DPVSRTPA-LVFEHVNNT------DFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF 232          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CSK21_BOVIN (Casein kinase II subunit alpha OS=Bos taurus GN=CSNK2A1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.988e-22
Identity = 63/217 (29.03%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   79 DAFEKLEKVGEGTYGKVYRA-----REKATGKIVA-LKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALF 711
            D ++ + K+G G Y +V+ A      EK   KI+  +KK ++            RE+ IL  L   P+++ L D+ +  +   RT   LVFE+++         F+Q  + +    ++  MY++ K + +CH  GI+HRD+KPHN+++D +   L++ D GLA  F  P ++Y   + + +++ PE+L+    Y  ++DMWS+ C+ A ++ +   F
Sbjct:   37 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIK-----------REIKILENLRGGPNIITLADIVK--DPVSRTPA-LVFEHVNNT------DFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE-FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF 232          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: HOG1_GIBIN (Mitogen-activated protein kinase HOG1 (Fragment) OS=Gibberella intermedia GN=HOG1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  163 VALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSELHSF 738
            VA+KK         +   T RE+ +L+ L  + +V+ L D+     ++    +Y V E + TDL + +     T   +    ++  +YQ+ +G+ + H  G++HRDLKP N+L++ +   LKI D GLAR   +   + T  + T +YRAPE++L    Y   VD+WS  CIFAE++    LFPG   ++ F
Sbjct:    1 VAVKKIMKPFSTPVLAKRTYRELKLLKHLKHE-NVISLSDIFISPLED----IYFVTELLGTDLHRLL-----TSRPLEKQFIQYFLYQIMRGLKYVHSAGVVHRDLKPSNILVN-ENCDLKICDFGLAR---IQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQF 178          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: HOG1_FUSCU (Mitogen-activated protein kinase HOG1 (Fragment) OS=Fusarium culmorum GN=HOG1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  163 VALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSELHSF 738
            VA+KK         +   T RE+ +L+ L  + +V+ L D+     ++    +Y V E + TDL + +     T   +    ++  +YQ+ +G+ + H  G++HRDLKP N+L++ +   LKI D GLAR   +   + T  + T +YRAPE++L    Y   VD+WS  CIFAE++    LFPG   ++ F
Sbjct:    1 VAVKKIMKPFSTPVLAKRTYRELKLLKHLKHE-NVISLSDIFISPLED----IYFVTELLGTDLHRLL-----TSRPLEKQFIQYFLYQIMRGLKYVHSAGVVHRDLKPSNILVN-ENCDLKICDFGLAR---IQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQF 178          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CSK2A_CAEEL (Casein kinase II subunit alpha OS=Caenorhabditis elegans GN=kin-3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 59/212 (27.83%), Postives = 115/212 (54.25%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALF 711
            +D ++ + K+G G Y +V+   + +T + V +K  +  +  +       RE+ IL  L    +++ L+DV +  +   RT   L+FE+++         F+Q  + +    ++  +Y+L K + FCH  GI+HRD+KPHN+++D +   L++ D GLA  F  P + Y   + + +++ PE+L+    Y  ++DMWS+ C+ A ++ +   F
Sbjct:   35 IDDYQLVRKLGRGKYSEVFEGFKMSTDEKVVVKILKPVKKKK-----IKREIKILENLRGGTNIITLLDVVK--DPISRTPA-LIFEHVNNS------DFKQLYQTLSDYDIRYYLYELLKALDFCHSQGIMHRDVKPHNVMIDAEKRELRLIDWGLAE-FYHPRQDYNVRVASRYFKGPELLVDYQCYDYSLDMWSLGCMLASMIFRKEPF 231          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CSK22_CHICK (Casein kinase II subunit alpha' OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 65/218 (29.82%), Postives = 115/218 (52.75%), Query Frame = 1
Query:   79 DAFEKLEKVGEGTYGKVYRA-----REKATGKIVA-LKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMD-VKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALF 711
            D ++ + K+G G Y +V+ A      E+   KI+  +KK ++            REV IL  L    +++ L+D VK   +K       LVFEY++         F+Q  + +    ++  MY+L K + +CH  GI+HRD+KPHN+++D +   L++ D GLA  F  P ++Y   + + +++ PE+L+    Y  ++DMWS+ C+ A ++ +   F
Sbjct:   38 DDYQLVRKLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIK-----------REVKILENLRGGTNIINLIDTVKDPVSKTPA----LVFEYINNT------DFKQLYQILTDFDIRFYMYELLKALDYCHSMGIMHRDVKPHNVMIDHQQKKLRLIDWGLAE-FYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF 233          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: IME2_YEAST (Meiosis induction protein kinase IME2/SME1 OS=Saccharomyces cerevisiae GN=IME2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.002e-21
Identity = 74/270 (27.41%), Postives = 130/270 (48.15%), Query Frame = 1
Query:   67 RMVMDAFEKLEKVGEGTYGKVYRAREK------------------------------ATGKIVALKK--TRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVK-QGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTM----------------TLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            + + D ++ +EK+G G++G V  A+ +                               T  +VA+K   T+LH   +    T +RE+  +  +  + H++++ +V    +N +    L++V E M+ +L + ++  R+   +IP  ++KS++ Q+  G+   H H   HRDLKP N+L+   T                  +K+AD GLAR        YT  + T WYR+PE+LL S +YS  +D+W+  C+  E+    ALFPG +E+
Sbjct:   32 KTLSDRYQLIEKLGAGSFGCVTLAKAQFPLSNILGKQHDIRGTLMDQPKNGHQNYITKTQGVVAIKTMMTKLHTLQDY---TRVREIKFILAIPANDHLIQIFEVFIDSENYQ----LHIVMECMEQNLYQMMKHRRRRVFSIP--SLKSILSQILAGLKHIHEHNFFHRDLKPENILITPSTQYFEKEYMNQIGYQDNYVIKLADFGLARHVENK-NPYTAYVSTRWYRSPEILLRSGYYSKPLDIWAFGCVAVEVTVFRALFPGANEI 291          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CSK21_RAT8.988e-2229.03Casein kinase II subunit alpha OS=Rattus norvegicu... [more]
CSK21_MOUSE8.988e-2229.03Casein kinase II subunit alpha OS=Mus musculus GN=... [more]
CSK21_HUMAN8.988e-2229.03Casein kinase II subunit alpha OS=Homo sapiens GN=... [more]
CSK21_CHICK8.988e-2229.03Casein kinase II subunit alpha OS=Gallus gallus GN... [more]
CSK21_BOVIN8.988e-2229.03Casein kinase II subunit alpha OS=Bos taurus GN=CS... [more]
HOG1_GIBIN1.533e-2132.81Mitogen-activated protein kinase HOG1 (Fragment) O... [more]
HOG1_FUSCU1.533e-2132.81Mitogen-activated protein kinase HOG1 (Fragment) O... [more]
CSK2A_CAEEL1.533e-2127.83Casein kinase II subunit alpha OS=Caenorhabditis e... [more]
CSK22_CHICK1.533e-2129.82Casein kinase II subunit alpha' OS=Gallus gallus P... [more]
IME2_YEAST2.002e-2127.41Meiosis induction protein kinase IME2/SME1 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
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