FC869306

Overview
NameFC869306
Unique NameFC869306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC869306_ssr46 microsatellite FC869306_ssr46:46..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9501 contig Ccv1_Contig9501:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKG2_ORYSI (Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. indica GN=CDKG-2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.502e-50
Identity = 104/217 (47.93%), Postives = 147/217 (67.74%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSE 726
            +D FE+L K+ EGTYG VYRAR+K TG+IVALKK ++ ++ EG P T+LRE++IL +    P +V + +V  G + +    +++V EYM+ DLK  + + +Q       + VK LM QL +GV + H + +LHRDLK  NLL++ +   LKI D GL+R +  P+K YT  ++TLWYRAPE+LLG+  YSTA+DMWSV CI AEL+ K  LF G +E
Sbjct:  362 VDEFERLNKINEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINIL-LSFHHPSIVDVKEVVVGSSLDS---IFMVMEYMEHDLKGVMEAMKQPYSQ---SEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRG-ELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGTKEYSTAIDMWSVGCIMAELLAKEPLFNGKTE 570          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK18_PONAB (Cell division protein kinase 18 OS=Pongo abelii GN=CDK18 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.973e-50
Identity = 107/222 (48.20%), Postives = 149/222 (67.12%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDS---ELH 732
            ++ + KL+K+GEGTY  V++ R K T  +VALK+ RL E +EG P T +REVS+L+ L +  ++V L D+           L LVFEY+D+DLK+Y+      G  + ++ VK  M+QL +G+A+CH   ILHRDLKP NLL++ +   LK+AD GLARA ++P K Y++E++TLWYR P+VLLGST YST +DMW V CI  E+ T   LFPG +   ELH
Sbjct:  139 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRL-EHEEGAPCTAIREVSLLKNL-KHANIVTLHDLIHTDRS-----LTLVFEYLDSDLKQYLD---HCGNLMSMHNVKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINERG-ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLFPGSTVKEELH 349          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK18_HUMAN (Cell division protein kinase 18 OS=Homo sapiens GN=CDK18 PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 5.973e-50
Identity = 107/222 (48.20%), Postives = 149/222 (67.12%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDS---ELH 732
            ++ + KL+K+GEGTY  V++ R K T  +VALK+ RL E +EG P T +REVS+L+ L +  ++V L D+           L LVFEY+D+DLK+Y+      G  + ++ VK  M+QL +G+A+CH   ILHRDLKP NLL++ +   LK+AD GLARA ++P K Y++E++TLWYR P+VLLGST YST +DMW V CI  E+ T   LFPG +   ELH
Sbjct:  139 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRL-EHEEGAPCTAIREVSLLKNL-KHANIVTLHDLIHTDRS-----LTLVFEYLDSDLKQYLD---HCGNLMSMHNVKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINERG-ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLFPGSTVKEELH 349          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CKD18_RAT (Cell division protein kinase 18 OS=Rattus norvegicus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.801e-50
Identity = 107/222 (48.20%), Postives = 149/222 (67.12%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDS---ELH 732
            ++ + KL+K+GEGTY  V++ R K T  +VALK+ RL E +EG P T +REVS+L+ L +  ++V L D+           L LVFEY+D+DLK+Y+      G  + ++ VK  M+QL +G+A+CH   ILHRDLKP NLL++ +   LK+AD GLARA ++P K Y++E++TLWYR P+VLLGST YST +DMW V CI  E+ T   LFPG +   ELH
Sbjct:  118 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRL-EHEEGAPCTAIREVSLLKDL-KHANIVTLHDLIHTDRS-----LTLVFEYLDSDLKQYLD---HCGNLMNMHNVKIFMFQLLRGLAYCHRRKILHRDLKPQNLLINERG-ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELH 328          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK18_MOUSE (Cell division protein kinase 18 OS=Mus musculus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.801e-50
Identity = 107/222 (48.20%), Postives = 149/222 (67.12%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDS---ELH 732
            ++ + KL+K+GEGTY  V++ R K T  +VALK+ RL E +EG P T +REVS+L+ L +  ++V L D+           L LVFEY+D+DLK+Y+      G  + ++ VK  M+QL +G+A+CH   ILHRDLKP NLL++ +   LK+AD GLARA ++P K Y++E++TLWYR P+VLLGST YST +DMW V CI  E+ T   LFPG +   ELH
Sbjct:  118 LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRL-EHEEGAPCTAIREVSLLKDL-KHANIVTLHDLIHTDRS-----LTLVFEYLDSDLKQYLD---HCGNLMNMHNVKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINERG-ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELH 328          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK2_ENTHI (Cell division protein kinase 2 homolog OS=Entamoeba histolytica GN=CDC2 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.625e-49
Identity = 98/214 (45.79%), Postives = 142/214 (66.36%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPG 717
            M  +EK +++GEGTYG V +A +    + VALKK +   +D+G+P T++RE+++L  L + P+VV L D+           LYLVFE+ D DL +    F      IP+N  +S++YQ+ +G+AFCH H ILHRD+KP N+L++ K  T+K+ + GLAR  T+  +KYT E++TLWYRAPE+LLG+T Y  A+D+WS A IF EL+ K  LF G
Sbjct:    1 MTRYEKKQQLGEGTYGVVCKAWDTVCNRYVALKKIKQEREDDGIPVTSVREIAVLLEL-KHPNVVDLYDIYLEDK-----FLYLVFEFCDEDLYQ----FMSRSSKIPINETRSIVYQILQGLAFCHYHQILHRDMKPQNILIN-KNGTIKLGEFGLARLTTINDRKYTSEVVTLWYRAPEILLGATQYGGAIDIWSTAAIFGELINKEELFKG 203          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDK16_RAT (Cell division protein kinase 16 OS=Rattus norvegicus GN=Cdk16 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.625e-49
Identity = 103/222 (46.40%), Postives = 148/222 (66.67%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPG---DSELH 732
            ++ + KL+K+GEGTY  VY+ + K T  +VALK+ RL E +EG P T +REVS+L+ L +  ++V L D+   +       L LVFEY+D DLK+Y+      G  I ++ VK  ++QL +G+A+CH   +LHRDLKP NLL++ +   LK+AD GLA A ++P K Y++E++TLWYR P++LLGST YS  +DMW V CIF E+ T   LFPG   + +LH
Sbjct:  162 LETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRL-EHEEGAPCTAIREVSLLKDL-KHANIVTLHDIIHTEKS-----LTLVFEYLDKDLKQYLDD---CGNVINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERG-ELKLADFGLAYAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSGQIDMWGVGCIFYEMATGRPLFPGSTVEEQLH 372          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSJ (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. japonica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.471e-48
Identity = 101/218 (46.33%), Postives = 145/218 (66.51%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +D FE+L  + EGTYG V+R R+K TG+IVALKK ++ ++ EG P T+LRE++IL +    P +V + +V  G N      +++V EYM+ DLK  + + +Q       + VK LM QL +GV + H + +LHRDLK  NLL++ +   LKI D GL+R +  P+K YT  ++TLWYRAPE+LLG+  YSTA+DMWS+ CI  EL++K  LF G SE+
Sbjct:  346 VDEFERLNTINEGTYGVVFRVRDKRTGEIVALKKVKMEKEREGFPLTSLREMNIL-LSFHHPSIVEVKEVVVGSNDRD---IFMVMEYMEHDLKGVMETMKQPYSQ---SEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRG-ELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGAKDYSTAIDMWSLGCIMGELLSKGPLFNGKSEI 555          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSI (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. indica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.471e-48
Identity = 101/218 (46.33%), Postives = 145/218 (66.51%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            +D FE+L  + EGTYG V+R R+K TG+IVALKK ++ ++ EG P T+LRE++IL +    P +V + +V  G N      +++V EYM+ DLK  + + +Q       + VK LM QL +GV + H + +LHRDLK  NLL++ +   LKI D GL+R +  P+K YT  ++TLWYRAPE+LLG+  YSTA+DMWS+ CI  EL++K  LF G SE+
Sbjct:  346 VDEFERLNTINEGTYGVVFRVRDKRTGEIVALKKVKMEKEREGFPLTSLREMNIL-LSFHHPSIVEVKEVVVGSNDRD---IFMVMEYMEHDLKGVMETMKQPYSQ---SEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNRG-ELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGAKDYSTAIDMWSLGCIMGELLSKGPLFNGKSEI 555          
BLAST of FC869306 vs. ExPASy Swiss-Prot
Match: CD11B_HUMAN (Cell division protein kinase 11B OS=Homo sapiens GN=CDK11B PE=1 SV=3)

HSP 1 Score: 192.2 bits (487), Expect = 2.509e-48
Identity = 100/218 (45.87%), Postives = 149/218 (68.35%), Query Frame = 1
Query:   76 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVACIFAELVTKTALFPGDSEL 729
            ++ F+ L ++ EGTYG VYRA++K T +IVALK+ ++ ++ EG P T+LRE++ + + ++ P++V + ++  G N +    +Y+V  Y++ DLK  + + +Q    +P   VK+LM QL +GV   H + ILHRDLK  NLL+    + LK+ D GLAR +  P+K YT  ++TLWYRAPE+LLG+  YSTAVDMWSV CIF EL+T+  LFPG SE+
Sbjct:  435 VEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTI-LKAQHPNIVTVREIVVGSNMDK---IYIVMNYVEHDLKSLMETMKQPF--LP-GEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGI-LKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSEI 644          
The following BLAST results are available for this feature:
BLAST of FC869306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKG2_ORYSI3.502e-5047.93Cyclin-dependent kinase G-2 OS=Oryza sativa subsp.... [more]
CDK18_PONAB5.973e-5048.20Cell division protein kinase 18 OS=Pongo abelii GN... [more]
CDK18_HUMAN5.973e-5048.20Cell division protein kinase 18 OS=Homo sapiens GN... [more]
CKD18_RAT7.801e-5048.20Cell division protein kinase 18 OS=Rattus norvegic... [more]
CDK18_MOUSE7.801e-5048.20Cell division protein kinase 18 OS=Mus musculus GN... [more]
CDK2_ENTHI8.625e-4945.79Cell division protein kinase 2 homolog OS=Entamoeb... [more]
CDK16_RAT8.625e-4946.40Cell division protein kinase 16 OS=Rattus norvegic... [more]
CDKG1_ORYSJ1.471e-4846.33Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
CDKG1_ORYSI1.471e-4846.33Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
CD11B_HUMAN2.509e-4845.87Cell division protein kinase 11B OS=Homo sapiens G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010G08EF AbioticL1 Citrus clementina cDNA clone C31010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869306 ID=FC869306; Name=FC869306; organism=Citrus clementina; type=EST; length=741bp
CCTTGGCCGGAAAAAGTTGATTTTATTTTATCTTTTGAAAGAGTAAAAAG
AAAAGAAAAGAAAGCAAGAATGGTGATGGACGCATTTGAGAAGCTAGAGA
AAGTAGGAGAAGGGACGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCA
ACTGGGAAGATCGTTGCTCTCAAGAAGACTCGTCTCCACGAGGACGATGA
AGGCGTACCCCCAACCACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCT
CTCGCGATCCCCATGTTGTTAGGTTGATGGATGTCAAACAAGGCCAGAAC
AAGGAAGGCAGGACGGTGCTCTACCTTGTTTTTGAGTACATGGACACTGA
TCTGAAGAAGTACATCCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTG
TTAACACTGTCAAGAGCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTC
TGCCATGGACATGGAATCCTTCATAGGGACCTTAAGCCTCACAATCTGTT
GATGGACCGAAAGACTATGACACTTAAGATAGCAGATCTTGGTTTAGCTC
GAGCATTTACTCTTCCAATTAAGAAATATACTCATGAGATATTGACCCTC
TGGTATAGGGCTCCGGAAGTCCTTTTGGGGTCCACCCATTACTCAACTGC
AGTTGATATGTGGTCTGTTGCCTGTATATTTGCGGAACTGGTTACNAAGA
CAGCACTTTTCCCTGGAGATTCTGAACTCCACAGCTTCTGC
back to top