FC869307

Overview
NameFC869307
Unique NameFC869307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_GLOVI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Gloeobacter violaceus GN=acsF PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.139e-37
Identity = 80/157 (50.96%), Postives = 108/157 (68.79%), Query Frame = 2
Query:  248 KETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWAS-*QS*EITFFKPKLSFMHIFI 715
            +ETLLTPRFYTTDF+ +      +++    +A+FEALL EF+ DYN+ HF R+  F E A ++    R + +EFLERSCT+EFSGFLLYKE+ RRLK  NP++AE F  MSRDEARHAGFLNK + D+ +    ++  +  + TFFKPK  F   ++
Sbjct:   17 RETLLTPRFYTTDFEAL-----AKLDISAMEADFEALLAEFQADYNREHFQRDAGFVEQAHQIDPQWRALMLEFLERSCTSEFSGFLLYKEISRRLKAANPLLAECFKAMSRDEARHAGFLNKAMGDYDLGLDLSNLAKQKKYTFFKPKFIFYATYL 168          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF1_ANASP (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Anabaena sp. (strain PCC 7120) GN=acsF1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.222e-37
Identity = 75/132 (56.82%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 631
            KT  KET+LTPRFYTTDF   ET  N +++ + N  E +A+L E + DYN+ HFVR++ F+++ + + G  RQ F+E+LERSC +EFSGFLL+KEL R+LK  +PV+AE+F LM+RDEARHAGFLNK + DF
Sbjct:   11 KTPSKETVLTPRFYTTDF---ETAANLDLSAQEN--ELQAMLAEMRADYNRHHFVRDEAFEQSWEHIDGEARQAFIEYLERSCISEFSGFLLFKELSRKLKNRSPVLAEMFQLMARDEARHAGFLNKAMGDF 137          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF2_THEEB (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=acsF2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.938e-35
Identity = 70/129 (54.26%), Postives = 93/129 (72.09%), Query Frame = 2
Query:  245 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 631
            I+E LLTPRFYTTDF++       +++    Q + EA+L E + DYN+ HFVR+  FK   D +    R+ F+++LERSC +EFSGFLL+KEL R+LK  NP++AEIF LM+RDEARHAGFLNK + DF
Sbjct:   17 IRENLLTPRFYTTDFEQA-----AKLDLSRQQEQLEAMLAEMRADYNRHHFVRDDSFKGTWDLLDAQTRKAFIDYLERSCVSEFSGFLLFKELSRKLKDRNPLLAEIFHLMARDEARHAGFLNKAMMDF 140          

HSP 2 Score: 21.9422 bits (45), Expect = 6.938e-35
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  628 FHYALDLGFLTKLGNHIF 681
            F +A+DLG+L+K   + F
Sbjct:  140 FGHAMDLGYLSKTRTYTF 157          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_BRASB (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=acsF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.277e-27
Identity = 71/165 (43.03%), Postives = 103/165 (62.42%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF-----IMHWTWAS*QS*EITFFKPKLSFMHIFI 715
            K A+++T+LTPRFYTTDF  M+ L     N  L + E++A++ E + D+N+ HFVR  EF++  +++   LR  F +FL  S TAEFSG +LY E+ +R+  TNP + E+FS MSRDEARHAGF+N+ L D      +   T       + T+FKPK  F   ++
Sbjct:   14 KMALEDTILTPRFYTTDFAAMDRL-----NVDLVRREWDAVMAELRADHNRKHFVRTPEFEKDLNELPEALRLEFKDFLVSSLTAEFSGCVLYAEIKKRI--TNPDIRELFSYMSRDEARHAGFINEILKDHGIGVDLGFLTKVK----KYTYFKPKFIFYATYL 167          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_BRASO (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Bradyrhizobium sp. (strain ORS278) GN=acsF PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 70/161 (43.48%), Postives = 102/161 (63.35%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF-IMHWTWAS*QS*EITFFKPKLSFMHIFI 715
            K A+++T+LTPRFYTTDF  M+ L     N  L + E++A++ E + D+N+ HFVR  EF +  +++   LR  F +FL  S TAEFSG +LY E+ +R+  TNP + E+F  MSRDEARHAGF+N+ L D  I        ++ + T+FKPK  F   ++
Sbjct:   14 KMALEDTILTPRFYTTDFAAMDRL-----NVDLVRREWDAVMAELRADHNRKHFVRTPEFDKDLNELPEALRAEFKDFLVSSLTAEFSGCVLYAEIKKRI--TNPDIRELFQFMSRDEARHAGFINEILKDHGIGVDLGFLTKTKKYTYFKPKFIFYATYL 167          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_RHOP2 (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodopseudomonas palustris (strain HaA2) GN=acsF PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 68/164 (41.46%), Postives = 101/164 (61.59%), Query Frame = 2
Query:  242 AIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEA-ADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF-----IMHWTWAS*QS*EITFFKPKLSFMHIFI 715
            A ++T+LTPRFYTTD+  M+ L     +  L ++E+  ++ E + DYN++HF +N EF E+  DK+   LR  F +FL  S TAEFSG +LY E+ +R+K  NP + E+F L+SRDEARHAGF+N+ L D      +   T       + T+F+PK  F   ++
Sbjct:   28 AKEDTILTPRFYTTDYAAMDKL-----DVSLVRSEWNVMMNEMRADYNKSHFKKNDEFLESDLDKLPPALRAEFKDFLVSSLTAEFSGCVLYAEIKKRIK--NPEIRELFGLLSRDEARHAGFINEILKDHGIGVDLSFLTKVK----KYTYFRPKFIFYATYL 180          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_RHOPT (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodopseudomonas palustris (strain TIE-1) GN=acsF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 68/164 (41.46%), Postives = 100/164 (60.98%), Query Frame = 2
Query:  242 AIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEA-ADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF-----IMHWTWAS*QS*EITFFKPKLSFMHIFI 715
            A ++T+LTPRFYTTD+  M+ L     +  L +AE+ A++ E + DYN++HF +  EF  +  DK+   LR  F +FL  S TAEFSG +LY E+ +R+K  NP + E+F L+SRDEARHAGF+N+ L D      +   T       + T+F+PK  F   ++
Sbjct:   28 AKQDTILTPRFYTTDYAAMDKL-----DVSLVRAEWTAMMNELRADYNKSHFKKTDEFLNSDLDKLPPELRAEFKDFLVSSLTAEFSGCVLYAEIKKRIK--NPEIRELFGLLSRDEARHAGFINEILKDHGIGVDLSFLTKVK----KYTYFRPKFIFYATYL 180          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_RHOPA (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodopseudomonas palustris GN=acsF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 68/164 (41.46%), Postives = 100/164 (60.98%), Query Frame = 2
Query:  242 AIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEA-ADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF-----IMHWTWAS*QS*EITFFKPKLSFMHIFI 715
            A ++T+LTPRFYTTD+  M+ L     +  L +AE+ A++ E + DYN++HF +  EF  +  DK+   LR  F +FL  S TAEFSG +LY E+ +R+K  NP + E+F L+SRDEARHAGF+N+ L D      +   T       + T+F+PK  F   ++
Sbjct:   28 AKQDTILTPRFYTTDYAAMDKL-----DVSLVRAEWTAMMNELRADYNKSHFKKTDEFVNSDLDKLPPELRAEFKDFLVSSLTAEFSGCVLYAEIKKRIK--NPEIRELFGLLSRDEARHAGFINEILKDHGIGVDLSFLTKVK----KYTYFRPKFIFYATYL 180          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_RHOPS (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodopseudomonas palustris (strain BisB5) GN=acsF PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.804e-24
Identity = 67/164 (40.85%), Postives = 99/164 (60.37%), Query Frame = 2
Query:  242 AIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEA-ADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF-----IMHWTWAS*QS*EITFFKPKLSFMHIFI 715
            A ++T+LTPRFYTTD+  M+ L     +  L ++E+ A++ E + DYN+ HF +  EF E+  DK+   L   F +FL  S TAEFSG +LY E+ +R+K  NP + E+F L+SRDEARHAGF+N+ L D      +   T       + T+F+PK  F   ++
Sbjct:   30 AKEDTILTPRFYTTDYAAMDKL-----DVSLVRSEWNAMMNEMRADYNKAHFKKTDEFLESDLDKLPPELLIEFKDFLVSSLTAEFSGCVLYSEIKKRIK--NPEIRELFGLLSRDEARHAGFINEILKDHGIGVDLSFLTKVK----KYTYFRPKFIFYATYL 182          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_RHOGE (Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Rhodocyclus gelatinosus GN=acsF PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.431e-21
Identity = 63/165 (38.18%), Postives = 99/165 (60.00%), Query Frame = 2
Query:  236 KTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEF-KEAADK---MQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFIMHWTWAS-*QS*EITFFKPKLSFMHIFI 715
            + A + TLL+PRFYTTD+  M  +  + I     +AE++A+L E++ D N  HF R  EF +E A++   +   LRQ F++FL  S T+EFSG +LY E+ + ++  NP V  +   M+R+E+RHAGF+N+ L DF +        ++   T+FKPK  F   ++
Sbjct:   15 RRAKESTLLSPRFYTTDYAAMNAIDVSSI-----RAEWDAMLAEYEGDNNHDHFQRTPEFAQEVAERFSQVSPELRQEFLDFLVSSVTSEFSGCVLYNEIQKNVE--NPDVKALMRYMARNESRHAGFINQALRDFGLGINLGGLKRTKAYTYFKPKYIFYATYL 172          
The following BLAST results are available for this feature:
BLAST of FC869307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_GLOVI4.139e-3750.96Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF1_ANASP9.222e-3756.82Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF2_THEEB6.938e-3554.26Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_BRASB2.277e-2743.03Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_BRASO3.883e-2743.48Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_RHOP29.565e-2641.46Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_RHOPT3.635e-2541.46Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_RHOPA3.635e-2541.46Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_RHOPS1.804e-2440.85Aerobic magnesium-protoporphyrin IX monomethyl est... [more]
ACSF_RHOGE5.431e-2138.18Aerobic magnesium-protoporphyrin IX monomethyl est... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31010G09EF AbioticL1 Citrus clementina cDNA clone C31010G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869307 ID=FC869307; Name=FC869307; organism=Citrus clementina; type=EST; length=716bp
AAGCCACTCAGTTTCCCTCTAGTACAAAAACTGGTTCCAGAAATGGCAGC
TGAGATGGCACTGGTCAAACTTGACCAGCAAATTCAGCACCATCGCCACC
ACTACTAAGCCTAGGTTCAGCTACCCGAAAGCAACATGTACATCTCTGAG
CACAAGATTTTGTACAATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTG
CTGCCACTGCCCAAAAGCCAAGCAAGAAATCAAACAAAACTGCTATCAAG
GAGACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGA
GACCCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTG
AGGCATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTG
AGGAACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAG
GCAGATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTG
GTTTCCTTCTTTACAAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCA
GTGGTAGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGC
CGGGTTTCTGAACAAGGGGCTATCTGATTTCATTATGCATTGGACTTGGG
CTTCCTGACAAAGCTAGGAAATCACATTTTTCAAGCCAAAGTTATCTTTT
ATGCACATATTTATCT
back to top