FC869307

Overview
NameFC869307
Unique NameFC869307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_PROMA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus GN=acsF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 2
Query:  245 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGL 622
            + E LLTPRFYTT+F++     + EI +K    +FEA+ +E + DYN  HF R K   E  D++    + ++  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L
Sbjct:   21 LDENLLTPRFYTTEFEKAAKT-DLEIARK----DFEAMFKEMEADYNLKHFDR-KASLERLDELSPEDKAVYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRAL 141          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_PROM4 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 2
Query:  245 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSD 628
            + E LLTPRFYTT+FD+       + + ++ + +F+A+  E + DYN  HF R        +++    + ++  +L RS  +EFSGFLL+KE+  R KK   P + + F  ++RDEARHAGFL + L +
Sbjct:   23 LDENLLTPRFYTTEFDKA-----AKTDLEIARRDFQAMFNEMEADYNLKHFDRKASLARL-NELSPKDKSVYESYLVRSVVSEFSGFLLFKEISNRFKKAKRPELGQFFQFLARDEARHAGFLGRALKE 145          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_PROM3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9303) GN=acsF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.338e-19
Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = 2
Query:  245 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGL 622
            + + LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R    +  AD +    + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L
Sbjct:   23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDRKASLERLAD-LSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRAL 143          
BLAST of FC869307 vs. ExPASy Swiss-Prot
Match: ACSF_PROMM (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9313) GN=acsF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = 2
Query:  245 IKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGL 622
            + + LLTPRFYTT+FD+      T+++  + + +FEA+ +E + DYN  HF R K   E   ++    + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L
Sbjct:   23 LDDNLLTPRFYTTEFDKAA---KTDLD--IARKDFEAMFKEMEADYNLKHFDR-KASLERLSELSPEDKAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRAL 143          
The following BLAST results are available for this feature:
BLAST of FC869307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_PROMA1.024e-1942.52Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM41.338e-1937.98Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM31.338e-1940.94Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMM5.084e-1940.94Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Properties
Property NameValue
Genbank descriptionC31010G09EF AbioticL1 Citrus clementina cDNA clone C31010G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869307 ID=FC869307; Name=FC869307; organism=Citrus clementina; type=EST; length=716bp
AAGCCACTCAGTTTCCCTCTAGTACAAAAACTGGTTCCAGAAATGGCAGC
TGAGATGGCACTGGTCAAACTTGACCAGCAAATTCAGCACCATCGCCACC
ACTACTAAGCCTAGGTTCAGCTACCCGAAAGCAACATGTACATCTCTGAG
CACAAGATTTTGTACAATCAAAATGTCAGCAACTTCAGAGCAAGCGGCTG
CTGCCACTGCCCAAAAGCCAAGCAAGAAATCAAACAAAACTGCTATCAAG
GAGACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGA
GACCCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTG
AGGCATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTG
AGGAACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAG
GCAGATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTG
GTTTCCTTCTTTACAAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCA
GTGGTAGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGC
CGGGTTTCTGAACAAGGGGCTATCTGATTTCATTATGCATTGGACTTGGG
CTTCCTGACAAAGCTAGGAAATCACATTTTTCAAGCCAAAGTTATCTTTT
ATGCACATATTTATCT
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