FC869310
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.133e-14 Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 2 Query: 221 PNRPLWF-PCSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460 P+RP + P S P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL K G+ W+ AG Sbjct: 51 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG 133
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.480e-14 Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 538 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + ++ +++ +G+ EG R Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR 175
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.933e-14 Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRR 538 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG L+Y + ++ +++ +G+ EG R Sbjct: 38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYR 147
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14 Identity = 49/138 (35.51%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 185 TRSVSVSAAAADPNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 T+ VS + P+R + P S PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+ W+ AG L+Y + + ++ ++I +G EG R A Sbjct: 38 TKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA 175
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14 Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 2 Query: 254 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG L+Y + + ++ V+++ +G EG R A Sbjct: 61 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 173
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14 Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 2 Query: 254 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG L+Y + + ++ V+++ +G EG R A Sbjct: 65 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 177
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14 Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + ++ ++I +G EG R A Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA 179
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14 Identity = 57/161 (35.40%), Postives = 79/161 (49.07%), Query Frame = 2 Query: 182 GTRSVSVSAAAA--DPNRPLWF-PCS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRRWA--------DIIKPGCVNTDP 580 G +SV+ S + P+R L+ P S PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG +L + ++ ++I +G EG R A D I PG N DP Sbjct: 50 GKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPG-GNFDP 209
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PE+L+K G+ W+ AG Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG 134
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14 Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 221 PNRPLWF-PCSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG---------------ELEYFTDTTTLFIVEMIFIGWAEGRR 538 P+RP + P S P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PE+L+K G+ W+ AG L + ++ V+++ +G+ EG R Sbjct: 50 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173 The following BLAST results are available for this feature:
BLAST of FC869310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC869310 ID=FC869310; Name=FC869310; organism=Citrus clementina; type=EST; length=581bpback to top |