FC869310
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13 Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 2 Query: 188 RSVSVSAAAADPNRPLWFPCSTP----------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460 R+VS SA + +W+ P P +L+G GD+G+D GL SDPET N + E++H RWAMLGA G PELL K G+ W+ AG Sbjct: 40 RTVSKSAGSDT----IWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG 137
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13 Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+ W+ AG L+Y + + ++ ++I +G EG R A Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 180
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13 Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG L+Y + + +++ ++I +G EG R A Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVA 176
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13 Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+ W+ AG L+Y + + ++ ++I +G EG R A Sbjct: 70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 181
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13 Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA---------DIIKPG 562 P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG L+Y + + ++ ++I +G EG R A D++ PG Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPG 193
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13 Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL++ G+ W+ AG L+Y + + ++ ++I +G EG R A Sbjct: 29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 140
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13 Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA---------DIIKPG 562 P +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PELL + G+ W+ AG L+Y + + ++ ++I +G EG R A D++ PG Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPG 193
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13 Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 2 Query: 257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 P +L G PGD+G+D L +DPET N + E++HCRWAMLGA G PELL + G+ W+ AG L+Y + + ++ +++ +G EG R A Sbjct: 68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13 Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 2 Query: 254 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544 PP +L G PGD+G+D GL +DPET N + E++H WAMLGA G PELL++ G+ W+ AG L+Y + + ++ +++ +G EG R A Sbjct: 6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 118
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13 Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 2 Query: 221 PNRPLW---FPCSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRR 538 PNR W + + P +L G PGD+G+D GL +DPET + + E++H RWAMLGA G PELL K G W+ AG L+Y + + + V++I +G EG R Sbjct: 39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR 163 The following BLAST results are available for this feature:
BLAST of FC869310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC869310 ID=FC869310; Name=FC869310; organism=Citrus clementina; type=EST; length=581bpback to top |