FC869310

Overview
NameFC869310
Unique NameFC869310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:404..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  188 RSVSVSAAAADPNRPLWFPCSTP----------PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAG 460
            R+VS SA +      +W+    P          P +L+G   GD+G+D  GL SDPET   N + E++H RWAMLGA G   PELL K G+      W+ AG
Sbjct:   40 RTVSKSAGSDT----IWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG 137          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   69 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 180          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +        +++  ++I +G  EG R A
Sbjct:   65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVA 176          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   70 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 181          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA---------DIIKPG 562
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A         D++ PG
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPG 193          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 41/112 (36.61%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A
Sbjct:   29 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA 140          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.791e-13
Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA---------DIIKPG 562
            P +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  ++I +G  EG R A         D++ PG
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPG 193          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  257 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            P +L G  PGD+G+D   L +DPET   N + E++HCRWAMLGA G   PELL + G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:   68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 2
Query:  254 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTT--------TLFIVEMIFIGWAEGRRWA 544
            PP +L G  PGD+G+D  GL +DPET   N + E++H  WAMLGA G   PELL++ G+      W+ AG        L+Y  + +         ++  +++ +G  EG R A
Sbjct:    6 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 118          
BLAST of FC869310 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 2
Query:  221 PNRPLW---FPCSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI-LNTPSWYTAGE-------LEYFTDTTTLF--------IVEMIFIGWAEGRR 538
            PNR  W   +  +  P +L G  PGD+G+D  GL +DPET +   + E++H RWAMLGA G   PELL K G       W+ AG        L+Y  + + +          V++I +G  EG R
Sbjct:   39 PNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR 163          
The following BLAST results are available for this feature:
BLAST of FC869310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB2_PHYPA2.791e-1340.20Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB28_PEA2.791e-1336.61Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_APIGR2.791e-1336.61Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PEA2.791e-1336.61Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_ARATH2.791e-1334.65Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA2.791e-1336.61Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_ARATH2.791e-1334.65Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB25_PETSP3.645e-1335.71Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_CUCSA3.645e-1335.40Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLRE4.761e-1336.00Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC31010G12EF AbioticL1 Citrus clementina cDNA clone C31010G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869310 ID=FC869310; Name=FC869310; organism=Citrus clementina; type=EST; length=581bp
CAGTCATAATTTTGCTGAAAGCCTTTGCCTGGTAGTATTTCCCGCTTCCG
TTTGTGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAG
AGTAGATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAA
GCTGAAATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAG
TGAGTGCGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCATGCAGC
ACTCCTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGA
TCCTCTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAAT
CAGAAATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTC
ATTCCGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTA
CACAGCTGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTG
TTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATT
ATAAAGCCAGGCTGTGTGAACACTGACCCGA
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