FC870246

Overview
NameFC870246
Unique NameFC870246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 194
            D  AGRLPGYG+ TNIINGG+ECG G +  V +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  266 DRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 197
            +A+D  AGR+PGYG+ TNIINGG+ECG+G +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  261 SADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 194
            +A D +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  187 SAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 230
            DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  255 DVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.531e-16
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 221
            D +AGRLPG+G+ TNIINGG+ECG G    V++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  245 DRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.531e-16
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 221
            + +D  AGR+PG+GL TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQR Y       SM
Sbjct:  249 SGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.245e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 230
            DV A RLPGYG  TNIINGG+ECG G +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  254 DVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.626e-15
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 221
            +++D  AGR  GYG+ TNIINGG+ECG G N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  230 SSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.773e-15
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 3
Query:   12 DVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 194
            D  AGR PG+G+ TNIINGG+ECG+G +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  205 DRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of FC870246 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.622e-15
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 3
Query:    3 AANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 194
            +A D +A R PGYG+ TNIINGGIECG G N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:  181 SAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
The following BLAST results are available for this feature:
BLAST of FC870246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CHIB_ARATH3.276e-1660.66Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI12_ORYSJ4.278e-1655.38Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC5.587e-1657.81Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_PHAVU7.297e-1652.05Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_VITVI9.531e-1651.43Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_THECC9.531e-1652.05Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI5_PHAVU1.245e-1552.05Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_GOSHI1.626e-1550.68Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIC_SECCE2.773e-1557.38Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIB_SOLLC3.622e-1556.25Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3AH08ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870246 ID=FC870246; Name=FC870246; organism=Citrus clementina; type=EST; length=638bp
GGGCAGCAAATGACGTAAACGCTGGCCGGCTTCCGGGATACGGTCTAACC
ACAAATATAATCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGC
TGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGA
TTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTT
AATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAA
TAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAG
GTGGACAACTAAACTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAACCTTGCCGCCCCCCCCGCCCCATCCAACTCAAAACCCAACAAAC
TTTATGCTGGCGCCCCAATTTCAACCCCATTGGCCCATTTCCCCCAAAAG
GGATTCAAATAAAATTTCCCGGGCCGCCTTTTAACACCGCCGGGACGGGA
AAACCCCGGGGTTTCCCCAATTTAACCCCTTTGCACCAATCCCCCTTTTC
CCCAGTGGGGAAAAAACCAAAAAGCCCCCCCCCATTCC
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