FC870253

Overview
NameFC870253
Unique NameFC870253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  317 GPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            GP  +PY GGV+ V +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP +PL  + A MY+    +Y+   + + QKYA
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  317 GPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            GP  +PY GGV+ V +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP +PL  + A MY+    +Y+   + + QKYA
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 42/110 (38.18%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  317 GPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            GP  +PY GGV+ V +  P  YPFK P + F  K+FHPNI+ ++G++CLD++ + W+    ++ +  S +  LL  PNP +PL  + A MY+    +Y+   + + QKYA
Sbjct:   40 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.091e-18
Identity = 53/156 (33.97%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  197 RVMASKRIL-KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            RV    R+L KE+ +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N D+PL  E A  ++ DK +Y +    + ++YA
Sbjct:   29 RVSVRDRLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18
Identity = 52/156 (33.33%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  197 RVMASKRIL-KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            R+    R+L KE+ +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N D+PL  E A  ++ DK +Y +    + ++YA
Sbjct:   29 RISVRDRLLVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  278 VAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            V ++M  +     GPS++PY+GG++ V +  P +YP+K P + F  ++FHPNI+  +GS+CLD++ + WSP   +  +  + +  LL  PN  +PL  E A + + +   Y +  R +  +YA
Sbjct:   25 VNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17
Identity = 48/143 (33.57%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  224 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYAM 643
            ++  DL+++     +A PV+EDM  W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   E+W+   T+S +LL++  +L++P  + P+  E A + + D++ Y +  R + +   M
Sbjct:   11 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNRPLQM 153          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17
Identity = 46/139 (33.09%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  206 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTAR 619
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP++PL  E A +  +++  +E   +
Sbjct:   30 AQLRIQKDINELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.315e-17
Identity = 54/176 (30.68%), Postives = 84/176 (47.73%), Query Frame = 2
Query:  212 KRILKELKDLQKDPPTSCSA---------GPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT----------------------KVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDEPLVPEIAHMY-MSDKAKYESTARSWTQKYA 640
            KR+LKE + ++K+     S           P+ + +F W A I GP  SP+   ++ + I  P +YP  PPK+ F                        K+ HPN+N   G ICLDIL+++WSPA T+   L++I  LL +P P  PL  ++A++    D   Y+     +  KY+
Sbjct:    6 KRLLKEYRAVKKELTEKRSPIHDTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYYIAKYS 181          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.315e-17
Identity = 46/139 (33.09%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  206 ASKRILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTAR 619
            A  RI K++ +L    P +C       +D+ +++  I  P +  Y GG F+ +      YP  PPKV   T V+HPNI+  G++CL+IL+E W P LTI+ ++  +  L  +PNP++PL  E A +  +++  +E   +
Sbjct:   30 AQLRIQKDITELNL--PKTCEIEFSDHDDLLNFKLVIC-PDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
The following BLAST results are available for this feature:
BLAST of FC870253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2H_MOUSE2.094e-1838.18Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN2.094e-1838.18Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN2.094e-1838.18Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBE2F_XENTR6.091e-1833.97NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA7.955e-1833.33NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBC8_SCHPO1.357e-1733.33Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBE2U_HUMAN1.772e-1733.57Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC12_XENTR1.772e-1733.09NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBCX_PICAN2.315e-1730.68Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC12_XENLA2.315e-1733.09NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1CA04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870253 ID=FC870253; Name=FC870253; organism=Citrus clementina; type=EST; length=880bp
GGGGCTCGACGATATTTGTGTTGAAGGACAACAAAGCAAGGGGTTGATAG
AGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCG
CTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTC
GCAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAG
TCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGAT
CCTCCCACGTCTTGTAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTG
GCAAGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTAT
TTTTAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAG
GTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAG
CATCTGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTT
CAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCCGAC
GAGCCTCTTGTACCGGAGATTGCCCACATGTACATGTCCGACAAGGCCAA
ATATGAATCCACGGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAA
GGTTGTTAGGATATTGCAGAAAAAGGAGCATTTATTGAAATATGTTGTGT
GTGTTGTCTATCTATTTTCTTTAACTTGCTTTGGGGAGGGCAGACGTTGG
TGTTTTAGAATGGTGTTGGGAGGAGTTGCAAGGGCGGGACGTTTTTATGT
TAATGTTGAATGTTTGTGTTTGAAGCTTCTTCGATGGAACGTAGTTAATG
GTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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