FC870253

Overview
NameFC870253
Unique NameFC870253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  215 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTAR 619
            R+ K++ +L        S      D+ +++ TI  P +  Y  G F+ +      YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN ++PL  E A +   +   +E   R
Sbjct:   35 RLHKDISELNLPKSCKISFPNGKNDLMNFEVTIK-PDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 2
Query:  218 ILKELKDLQKDPPTSCSAG-PVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            ++KE+ +L+ + P++C    P    + H+Q  I  P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N D+PL  + A  ++ DK  + +  + + + YA
Sbjct:   37 LIKEVAELEANLPSTCKVTFPDENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYA 184          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16
Identity = 48/150 (32.00%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  212 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N D+PL  E A  ++ DK  +      + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  206 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 535
            A KR++KE   LQK+P     A P  E++  W   I GP D+PY GG +  T+ FPPDYPFKPP +   T        +N  +CL   D   + W+P+  +S +L+ + S +T
Sbjct:    6 AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMT 116          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 2
Query:  215 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL------------KEQWSPALTISKVLLSICSLLTDPNPDEPLVPEIAHMYMSDKAKYESTAR 619
            R  +EL D +K  P+         ++F W   +M  + DS Y GG F   + FP D+PF PP+  F   ++HPN+  +G +C+ IL             E WSP  T+  VL+SI SLL DPN + P   + A  Y  +  +Y+   +
Sbjct:   14 RQYRELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVK 161          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.701e-16
Identity = 48/150 (32.00%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  212 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N D+PL  E A  ++ DK  +      + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.446e-16
Identity = 48/150 (32.00%), Postives = 74/150 (49.33%), Query Frame = 2
Query:  212 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N D+PL  E A  ++ DK  + +    + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 184          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.446e-16
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 2
Query:  203 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLL-TDPNPDEP 556
            +A  R+ KEL + Q +PPT      V +++  W   + G   + YA   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L + P    P
Sbjct:   15 IACNRLQKELSEWQVNPPTGFKHR-VTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSPEKQRP 133          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  203 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 535
            +A  R+ KEL + Q +PPT      V +++  W   + G   + YA   + + + FP  YP + P+V F +    HP+I SNG ICLDIL + WSPA+T++ V +SI S+L+
Sbjct:   15 IACNRLQKELSEWQLNPPTGFRH-KVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLS 125          
BLAST of FC870253 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 50/156 (32.05%), Postives = 76/156 (48.72%), Query Frame = 2
Query:  197 RVMASKRIL-KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDEPLVPEIAHMYMSDKAKYESTARSWTQKYA 640
            RV    R+L KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N D+PL  E A  ++ DK  + +    + ++YA
Sbjct:   29 RVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of FC870253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB12L_ARATH2.559e-1632.59Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBE2F_DANRE4.365e-1632.89NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBE2F_RAT5.701e-1632.00NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBC6_SCHPO5.701e-1638.05Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]
UBC3_YEAST5.701e-1633.11Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UB2FA_MOUSE5.701e-1632.00NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_HUMAN7.446e-1632.00NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UBC18_ARATH7.446e-1638.33Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC15_ARATH9.725e-1638.39Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBE2F_BOVIN1.270e-1532.05NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1CA04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870253 ID=FC870253; Name=FC870253; organism=Citrus clementina; type=EST; length=880bp
GGGGCTCGACGATATTTGTGTTGAAGGACAACAAAGCAAGGGGTTGATAG
AGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCACCGTTTCG
CTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTC
GCAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCTTGAAGAG
TCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGAT
CCTCCCACGTCTTGTAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTG
GCAAGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTAT
TTTTAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAG
GTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAG
CATCTGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTT
CAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCCGAC
GAGCCTCTTGTACCGGAGATTGCCCACATGTACATGTCCGACAAGGCCAA
ATATGAATCCACGGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAA
GGTTGTTAGGATATTGCAGAAAAAGGAGCATTTATTGAAATATGTTGTGT
GTGTTGTCTATCTATTTTCTTTAACTTGCTTTGGGGAGGGCAGACGTTGG
TGTTTTAGAATGGTGTTGGGAGGAGTTGCAAGGGCGGGACGTTTTTATGT
TAATGTTGAATGTTTGTGTTTGAAGCTTCTTCGATGGAACGTAGTTAATG
GTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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