FC870397

Overview
NameFC870397
Unique NameFC870397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
[Close]
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.894e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 114
            GKPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  407 GKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444
The following BLAST results are available for this feature:
BLAST of FC870397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
EF1A3_HUMAN8.894e-1389.47Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A1_RAT8.894e-1389.47Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT8.894e-1389.47Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB8.894e-1389.47Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]
EF1A1_PANTR8.894e-1389.47Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE8.894e-1389.47Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN8.894e-1389.47Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
EF1A1_HORSE8.894e-1389.47Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A1_FELCA8.894e-1389.47Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR8.894e-1389.47Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3BH04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870397 ID=FC870397; Name=FC870397; organism=Citrus clementina; type=EST; length=481bp
GGGAAGCCCATGGTTGTTGAGACCTTCTCCGATTACCCACCCCTTGGTCG
TTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGA
GTGTTGAGAAGAAGGATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCC
AAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTA
TTTTCTGTCTTTTTTTATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTT
TCTGCAAACAGCCCTATTTGGTTCCACCAGTTTGCTGTTGAGCAATTGGG
ATGTTATCTTTCTGCTTGACTGGCTGTGGTGGGGGTTCGGATTTTTATAT
TCTGAATTTGGTTAATAGCATTAAATTGAGTTGTGAAGTTTATAGACCAG
CTGCTGGATGTCAAAGTTGGTGGTTTTAATACATTTGGAAGCTCATTTTA
AACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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