FC870397

Overview
NameFC870397
Unique NameFC870397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK+V+ K+ +G
Sbjct:  408 KPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 123
            KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSV K D T
Sbjct:  407 KPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSDKT 446          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.833e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KP+ VET++DYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  406 KPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.284e-11
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 123
            KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIKSV KK+ T
Sbjct:  392 KPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKEAT 431          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.677e-11
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPM VE F+DY PLGRFAVRDMRQTVAVG+IK+V KKD +G
Sbjct:  396 KPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.677e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPM VE++++YPPLGRFAVRDMRQTVAVGVIKSVEK +  G
Sbjct:  408 KPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.677e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KP+ VETF++YPPLGRFAVRDMRQTVAVGVIK+V+K +  G
Sbjct:  408 KPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSEGVG 448          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.191e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 117
            KPM VE FS+YPPLGRFAVRDMRQTVAVGVIKSV+K +
Sbjct:  406 KPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.191e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 111
            KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+VEK
Sbjct:  407 KPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEK 442          
BLAST of FC870397 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.191e-11
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    4 KPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 126
            KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+  G
Sbjct:  293 KPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
The following BLAST results are available for this feature:
BLAST of FC870397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
EF1A_ORYLA7.529e-1280.49Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_AJECG7.529e-1285.00Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_CRYNE9.833e-1278.05Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A_CRYPV1.284e-1180.00Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_TRYBB1.677e-1178.05Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_PIRIN1.677e-1178.05Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_ONCVO1.677e-1175.61Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_YEAST2.191e-1184.21Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_TRIRE2.191e-1188.89Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_EIMBO2.191e-1178.05Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3BH04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870397 ID=FC870397; Name=FC870397; organism=Citrus clementina; type=EST; length=481bp
GGGAAGCCCATGGTTGTTGAGACCTTCTCCGATTACCCACCCCTTGGTCG
TTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTATCAAGA
GTGTTGAGAAGAAGGATCCCACAGGTGCGAAGGTCACCAAGTCCGCAGCC
AAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGGGTTTA
TTTTCTGTCTTTTTTTATTTTCTTGTCTGTTTTTGTTTTGCATCAATGTT
TCTGCAAACAGCCCTATTTGGTTCCACCAGTTTGCTGTTGAGCAATTGGG
ATGTTATCTTTCTGCTTGACTGGCTGTGGTGGGGGTTCGGATTTTTATAT
TCTGAATTTGGTTAATAGCATTAAATTGAGTTGTGAAGTTTATAGACCAG
CTGCTGGATGTCAAAGTTGGTGGTTTTAATACATTTGGAAGCTCATTTTA
AACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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