FC870784

Overview
NameFC870784
Unique NameFC870784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC870784 vs. ExPASy Swiss-Prot
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = 2 
Query:   68 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 298
            MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E  V+G EK  IG V IRGNSV+ +E L+ ++
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77
The following BLAST results are available for this feature:
BLAST of FC870784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_SCHPO4.606e-1346.84Probable small nuclear ribonucleoprotein G OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CB03ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2CB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870784 ID=FC870784; Name=FC870784; organism=Citrus clementina; type=EST; length=569bp
GGGGGCAGCTCACTCGCTTTGCTTTCTTCCGTGCTTTTTCTCTGAAACGA
TCCGCTAGGCTTCGACAATGAGCAGATCAGGCCAGCCTCCGGATCTCAAG
AAGTACATGGATAAGAAGCTTCAGATCAAGCTCAATGCTAATAGGATGAT
TGTTGGAACACTTCGTGGATTTGATCAGTTTATGAATCTTGTGATTGACA
ACACAGTTGAGGTCAATGGCAATGAGAAAAATGATATAGGGATGGTGGTT
ATCAGAGGGAATAGTGTAGTCACTGTTGAAGCCCTTGAACCGGTAAGCAA
ATCACAGTGACGTGGTTTGCCACTGGGGTCGATGTAATGTGCTTTCTGAT
CTTCTTTGTGTACTATTATGAATATTAAGGCTGTTAGTATGCAATGGGAG
ATGTTTCATGCTGTTGTACCTGAGAAAATTTAGGCCATTTTCTTTGTAAT
GCTTATTCTAAGGGAGCTCGTTTGAACAGGTAATTAGAATTAATCATTGA
ATGACCAATGGAATGAATCAGCAAGATTTAACACTTCGGTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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