FC870833

Overview
NameFC870833
Unique NameFC870833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: PHOR_BACSU (Alkaline phosphatase synthesis sensor protein phoR OS=Bacillus subtilis GN=phoR PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 60/162 (37.04%), Postives = 85/162 (52.47%), Query Frame = 2
Query:    5 GEVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 490
            GE+  L+K  A  K + + LN+  D P+Y  GD  RL Q  LN+V NA+ +T EG     G VA +   R+                ++++V DSG GI  ++IP +F +F +      RNS G+GLGLAI K  +   EG I + SE LG+G   +F V L
Sbjct:  433 GEIETLLKHKADEKGISLHLNVPKD-PQYVSGDPYRLKQVFLNLVNNALTYTPEG-----GSVAINVKPREKD--------------IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSE-LGRG--TVFTVTL 571          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: DHKL_DICDI (Hybrid signal transduction histidine kinase L OS=Dictyostelium discoideum GN=dhkL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 55/149 (36.91%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   74 PDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNL-MEGHIWIESE-GLGKGCTAIFIVKLGIPEHSND 514
            P +P   +G   RL Q L N++GN++KFT +G ISI         L D           ++ + ++V VRD+G GI  + +P LF  F Q +    R   GSGLGLAICK  V+L   G I +ES+ G G   T I   K  +P  S +
Sbjct:  934 PKIPNILIGPSSRLNQILTNLLGNSLKFTDKGEISICCL------LNDET---------DSEYEIKVDVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVHLAFNGEISVESQYGHGSTFTCILKFKKFLPSDSQN 1067          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: DHKB_DICDI (Hybrid signal transduction histidine kinase B OS=Dictyostelium discoideum GN=dhkB PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 50/152 (32.89%), Postives = 76/152 (50.00%), Query Frame = 2
Query:   44 KKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIP 499
            K L + + + P++P    GD++R+ Q LLN + N++KFT  G I I   +   +S                H  ++  V DSG GI  + +  LF  F+Q  +   R   G+GLGL+I KR   +M G + ++SE  G G T  F +  GIP
Sbjct: 1054 KGLDLCIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTNHGQIIIRVKLESDDS---------------THSLIKFDVEDSGIGIKTEHLNQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGDVKVKSE-FGVGSTFSFTIPCGIP 1189          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: DHKD_DICDI (Hybrid signal transduction histidine kinase D OS=Dictyostelium discoideum GN=dhkD PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 55/182 (30.22%), Postives = 92/182 (50.55%), Query Frame = 2
Query:   35 ASVKKLLVALNLAPDLPEYA------VGDEKRLMQTLLNVVGNAVKFTKEG-----NISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPC 547
            A  KK+ V  N+  +  E +      VGD+ RL Q + N++ N++KFTKE      N+ +   +   E L     P F  +      ++   + D+G GI  Q +P++F +F Q    + R+  G G+GL+I +  ++L +G ++  SEG  KG  + F V L I + S+ SN S   ++ C
Sbjct:  846 AQSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKVVNQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFLPSVFDRFKQADCSSTRSYGGLGIGLSITQNIIHLHKGAVYANSEGENKG--SQFTVVLPIIKGSSSSNSSPSNQLSC 1025          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: DOKA_DICDI (Hybrid signal transduction protein dokA OS=Dictyostelium discoideum GN=dokA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.863e-14
Identity = 58/146 (39.73%), Postives = 70/146 (47.95%), Query Frame = 2
Query:   80 LPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIES---EGLGKGCTAIFIVKLGIPEHS 508
            +P    GD   L + LLN+VGNAVKFT+      TGFV    S       +           LR  V+DSG GI    I  +F  F Q      R   GSGLGL+ CK  V LM G+I +ES   EG GKG T  F +K+ I   S
Sbjct: 1151 VPPVIFGDRNSLKKVLLNLVGNAVKFTE------TGFVLLEISTDYESGDQIS---------LRFTVKDSGIGIPENKIEQIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEG-GKGTTFWFAIKVSISSPS 1280          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: TCSA_EMENI (Two-component system protein A OS=Emericella nidulans GN=tcsA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 49/142 (34.51%), Postives = 68/142 (47.89%), Query Frame = 2
Query:   68 LAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLG 493
            ++P LP    GD  R  Q L N+VGNAVKFT++G+I +    +  E   DS               +R +V D+G G+    I  LFT F++    A R   G+GLGL+ICK    LM+G +         G    F  K+G
Sbjct:  401 ISPKLPTRMRGDPLRYRQVLQNLVGNAVKFTEKGSIHVKITSSTDEEDSDSSV-------------VRTEVTDTGIGVPDSAINTLFTPFSRFANSAARKYQGTGLGLSICKSLAELMDGSVGYSPNPNASGSVFWFTAKMG 529          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: RCSC_ECOLI (Sensor kinase protein rcsC OS=Escherichia coli (strain K12) GN=rcsC PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 55/159 (34.59%), Postives = 83/159 (52.20%), Query Frame = 2
Query:    8 EVLNLIK----PIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE-GLGKGCT 469
            EV+N I     P+   K+L +   + PD+P    GD  RL Q + N++ NA+KFT  G I +             RA         +  YL ++VRD+G GI  +++  LF  F Q      RN  G+GLGLAIC++ +++M+G I ++SE G+G   T
Sbjct:  547 EVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVL-----------HVRA---------DGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFT 685          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: RCSC_SALTY (Sensor protein rcsC OS=Salmonella typhimurium GN=rcsC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 2
Query:    8 EVLNLIK----PIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE-GLGKGCT 469
            EV+N I     P+   K+L +   + PD+P    GD  RL Q + N++ NA+KFT  G I +                    V  +   YL ++VRD+G GI  +++  LF  F Q      RN  G+GLGLAIC++ +++M+G I ++SE G+G   T
Sbjct:  547 EVMNHITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVLH-------------------VRCDGD-YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFT 685          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: RCSC_SALTI (Sensor protein rcsC OS=Salmonella typhi GN=rcsC PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 2
Query:    8 EVLNLIK----PIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE-GLGKGCT 469
            EV+N I     P+   K+L +   + PD+P    GD  RL Q + N++ NA+KFT  G I +                    V  +   YL ++VRD+G GI  +++  LF  F Q      RN  G+GLGLAIC++ +++M+G I ++SE G+G   T
Sbjct:  547 EVMNHITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVLH-------------------VRCDGD-YLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFT 685          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: DHKJ_DICDI (Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 2
Query:   35 ASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIF 478
            A  K + +  ++A D+P+  +GD  RL Q + N+VGNA+KFT +G + +   V KS S                   L+  V D+G GI    +  +F  F+Q      R   G+GLGL I  R V LM+G + + S+  GKG T  F
Sbjct: 1437 AHQKCIELVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSC--------------GEVVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKS-GKGSTFEF 1569          
The following BLAST results are available for this feature:
BLAST of FC870833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PHOR_BACSU5.218e-1637.04Alkaline phosphatase synthesis sensor protein phoR... [more]
DHKL_DICDI8.901e-1636.91Hybrid signal transduction histidine kinase L OS=D... [more]
DHKB_DICDI5.769e-1532.89Hybrid signal transduction histidine kinase B OS=D... [more]
DHKD_DICDI9.841e-1530.22Hybrid signal transduction histidine kinase D OS=D... [more]
DOKA_DICDI2.863e-1439.73Hybrid signal transduction protein dokA OS=Dictyos... [more]
TCSA_EMENI3.740e-1434.51Two-component system protein A OS=Emericella nidul... [more]
RCSC_ECOLI4.884e-1434.59Sensor kinase protein rcsC OS=Escherichia coli (st... [more]
RCSC_SALTY1.421e-1333.96Sensor protein rcsC OS=Salmonella typhimurium GN=r... [more]
RCSC_SALTI1.421e-1333.96Sensor protein rcsC OS=Salmonella typhi GN=rcsC PE... [more]
DHKJ_DICDI2.424e-1333.78Hybrid signal transduction histidine kinase J OS=D... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CH01ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870833 ID=FC870833; Name=FC870833; organism=Citrus clementina; type=EST; length=713bp
GCGGGGGGAGGTCCTTAACCTAATCAAGCCTATCGCATCAGTTAAGAAGT
TGCTCGTCGCGTTGAATTTGGCTCCAGATCTGCCGGAGTATGCAGTTGGT
GATGAGAAGCGCCTTATGCAAACTCTTTTAAATGTTGTTGGTAATGCTGT
GAAGTTTACCAAAGAAGGCAACATCTCAATCACTGGTTTTGTAGCAAAAT
CAGAATCTTTACGAGACTCTCGAGCTCCTGAGTTTTTTCCAGTACCGATT
GAAAATCATTTTTATTTACGTGTACAGGTCAGAGATTCTGGATCTGGTAT
TAGCCCTCAAGATATTCCAAATTTATTTACAAAATTTGCACAAAATCAAG
CAATTGCACTAAGAAATTCTAGTGGCAGTGGACTTGGCCTGGCAATTTGT
AAGAGGTTTGTGAATCTTATGGAGGGACATATCTGGATTGAAAGTGAAGG
TCTTGGAAAGGGTTGTACTGCCATCTTCATTGTAAAACTTGGGATTCCGG
AGCACTCAAATGATTCTAACCTCTCCTTTATTCCAAAAATGCCGTGTTAG
CAGGTCAGTGACTAAGGGACTTCTGTTGCACCTGGGATGTGATGTAATGA
CGGTGAGCTCTGTTGAGGAGTGCTTCCAAGTTGTTTCTCACGAACACCAG
GTGGTCTTCATGGACGTTTGCGTGCCTGGAATTGATGGTTATGAAGTCGC
TGTCCATATACAT
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