FC870833

Overview
NameFC870833
Unique NameFC870833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: DHKK_DICDI (Hybrid signal transduction histidine kinase K OS=Dictyostelium discoideum GN=dhkK PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 45/161 (27.95%), Postives = 82/161 (50.93%), Query Frame = 2
Query:    8 EVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 490
            ++ +++   A+ K + ++  ++  +P   +GD  R++Q L+N+ GNA+KFT+ G + I   + + ES   S          +  + +  +V+D+G G+  +    +F  F Q      R   GSGLGL +C + V LM+G I + +     G T  FI+ L
Sbjct:  898 QICHVLSGQANEKNIHLSCEVSDKIPSILLGDSGRILQILMNLTGNALKFTQSGYVKIIIDLIEEESELVSLK--------KGEYNISFRVKDTGIGVPVESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVRLMKGEIGVYNNPDCDGSTFWFILPL 1050          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: DHKF_DICDI (Hybrid signal transduction histidine kinase F OS=Dictyostelium discoideum GN=dhkF PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 50/164 (30.49%), Postives = 78/164 (47.56%), Query Frame = 2
Query:   44 KKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP 535
            K + +A  +  D+P   +GD  RL+Q +LN+  NAVK+T  G+I     V   E               +N   +++ + DSG GI      +LF  F Q  + + R   GSGLGLAI  +   LM G + +E    G G  ++F V L   +  +++  S +P
Sbjct:  412 KPIEIAFLMDTDIPHRLIGDPNRLIQIMLNMGTNAVKYTDRGHIVFRISVISRE---------------QNRCKIKISIDDSGIGIGEDQRAHLFEPFHQIDSSSTRKYGGSGLGLAISSKLAKLMGGEVILERSKPGVG--SLFSVTLNFEQIGSNTLKSLLP 558          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: LUXQ_VIBVY (Autoinducer 2 sensor kinase/phosphatase luxQ OS=Vibrio vulnificus (strain YJ016) GN=luxQ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 2
Query:   17 NLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCT 469
            N+ +PI   K +   ++    L      D+ RL Q + N++ NAVKFT  G I ++    K E    S            H  L +QV D+G GI    + ++F  F Q  +++ R   GSGLGL I K  V ++EG I ++SE L KG T
Sbjct:  568 NIYRPICREKGVSFEIHNQIPLDCQLHTDQVRLNQIMFNLISNAVKFTPAGRIEVS---FKLEQFARSE-----------HSILSIQVSDTGIGIDESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSE-LCKGST 703          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: LUXQ_VIBVU (Autoinducer 2 sensor kinase/phosphatase luxQ OS=Vibrio vulnificus GN=luxQ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 2
Query:   17 NLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCT 469
            N+ +PI   K +   ++    L      D+ RL Q + N++ NAVKFT  G I ++    K E    S            H  L +QV D+G GI    + ++F  F Q  +++ R   GSGLGL I K  V ++EG I ++SE L KG T
Sbjct:  568 NIYRPICREKGVSFEIHNQIPLDCQLHTDQVRLNQIMFNLISNAVKFTPAGRIEVS---FKLEKFARSE-----------HSILSIQVSDTGIGIDESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSE-LCKGST 703          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: EVGS_ECOLI (Sensor protein evgS OS=Escherichia coli (strain K12) GN=evgS PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 47/148 (31.76%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VALNLAPDLPEYAVG--DEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE-GLGKGCTAIFIVKL 490
            +AL+ +   PE+ +   D +   Q L N++ NA+KFT EG + IT  +   +               +NH  +++ + DSGSG+S ++   LF +++Q    A R  +GSGLGL ICK  +  M+G + +ES  G+G   T    V++
Sbjct:  808 IALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHID---------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTS--AGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEI 938          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: EVGS_ECO57 (Sensor protein evgS OS=Escherichia coli O157:H7 GN=evgS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 46/148 (31.08%), Postives = 78/148 (52.70%), Query Frame = 2
Query:   56 VALNLAPDLPEYAVG--DEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESE-GLGKGCTAIFIVKL 490
            +AL+ +   P++ +   D +   Q L N++ NA+KFT EG + IT  +   +               +NH  +++ + DSGSG+S ++   LF +++Q    A R  +GSGLGL ICK  +  M+G + +ES  G+G   T    V++
Sbjct:  808 IALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHID---------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTS--AGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEI 938          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: RPFC_XANCP (Sensory/regulatory protein rpfC OS=Xanthomonas campestris pv. campestris GN=rpfC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 56/173 (32.37%), Postives = 77/173 (44.51%), Query Frame = 2
Query:    5 GEVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNL 523
            G V  +++P A  ++L     +A D+P+   GD   L Q LLN+VGNAVKFT+ G++           LR +R         E+   LR  V D+G G+     P LF  F Q      R   G+GLG  I K  V  M G I  + E    G    F + + I E    S +
Sbjct:  220 GSVNLILQPQARGRRLEYGTQVADDVPDLLKGDTAHLRQVLLNLVGNAVKFTEHGHV----------LLRVTRVSG----SAEDAVRLRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFK-ENQPSGSVFWFELPMAIGEPLKSSTV 377          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: RPFC_XANC8 (Sensory/regulatory protein rpfC OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpfC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 56/173 (32.37%), Postives = 77/173 (44.51%), Query Frame = 2
Query:    5 GEVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNL 523
            G V  +++P A  ++L     +A D+P+   GD   L Q LLN+VGNAVKFT+ G++           LR +R         E+   LR  V D+G G+     P LF  F Q      R   G+GLG  I K  V  M G I  + E    G    F + + I E    S +
Sbjct:  220 GSVNLILQPQARGRRLEYGTQVADDVPDLLKGDTAHLRQVLLNLVGNAVKFTEHGHV----------LLRVTRVSG----SAEDAVRLRFDVEDTGIGVPMDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFK-ENQPSGSVFWFELPMAIGEPLKSSTV 377          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: LUXQ_VIBHA (Autoinducer 2 sensor kinase/phosphatase luxQ OS=Vibrio harveyi GN=luxQ PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 2
Query:   17 NLIKPIASVK--KLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPE 502
            N+ +PI + K  +L++   L P++  +   D+ RL Q L N+V NAVKFT  G+I +   + +     +S               L V++ D+G GI    +  +F  F Q ++   R   GSGLGL I K  V+++EG + + S    KG    F++ L + +
Sbjct:  567 NIYRPICTNKGVELVIENELDPNVEIFT--DQVRLNQILFNLVSNAVKFTPIGSIRLHAELEQFYGAENS--------------VLVVELTDTGIGIESDKLDQMFEPFVQEESTTTREYGGSGLGLTIVKNLVDMLEGDVQVRS---SKGGGTTFVITLPVKD 711          
BLAST of FC870833 vs. ExPASy Swiss-Prot
Match: ARCB_HAEIN (Aerobic respiration control sensor protein arcB homolog OS=Haemophilus influenzae GN=arcB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 2
Query:    8 EVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLM 421
            ++ N    +A  K L+ +L L P+LP +   D  RL Q L N++ NAVKFT +GNI +       + +R+     F              V+D+G GISP++  ++F  + Q +  + + S+GSG+GLAI K    LM
Sbjct:  203 DIYNFASFLAKEKNLIFSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGNIIL-------KIMRNQDCYHFI-------------VKDTGMGISPEEQKHIFEMYYQVKE-SRQQSAGSGIGLAISKNLAQLM 319          
The following BLAST results are available for this feature:
BLAST of FC870833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
DHKK_DICDI3.166e-1327.95Hybrid signal transduction histidine kinase K OS=D... [more]
DHKF_DICDI3.166e-1330.49Hybrid signal transduction histidine kinase F OS=D... [more]
LUXQ_VIBVY4.135e-1333.77Autoinducer 2 sensor kinase/phosphatase luxQ OS=Vi... [more]
LUXQ_VIBVU4.135e-1333.77Autoinducer 2 sensor kinase/phosphatase luxQ OS=Vi... [more]
EVGS_ECOLI1.203e-1231.76Sensor protein evgS OS=Escherichia coli (strain K1... [more]
EVGS_ECO572.680e-1231.08Sensor protein evgS OS=Escherichia coli O157:H7 GN... [more]
RPFC_XANCP5.970e-1232.37Sensory/regulatory protein rpfC OS=Xanthomonas cam... [more]
RPFC_XANC85.970e-1232.37Sensory/regulatory protein rpfC OS=Xanthomonas cam... [more]
LUXQ_VIBHA5.970e-1229.88Autoinducer 2 sensor kinase/phosphatase luxQ OS=Vi... [more]
ARCB_HAEIN7.798e-1233.33Aerobic respiration control sensor protein arcB ho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2CH01ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870833 ID=FC870833; Name=FC870833; organism=Citrus clementina; type=EST; length=713bp
GCGGGGGGAGGTCCTTAACCTAATCAAGCCTATCGCATCAGTTAAGAAGT
TGCTCGTCGCGTTGAATTTGGCTCCAGATCTGCCGGAGTATGCAGTTGGT
GATGAGAAGCGCCTTATGCAAACTCTTTTAAATGTTGTTGGTAATGCTGT
GAAGTTTACCAAAGAAGGCAACATCTCAATCACTGGTTTTGTAGCAAAAT
CAGAATCTTTACGAGACTCTCGAGCTCCTGAGTTTTTTCCAGTACCGATT
GAAAATCATTTTTATTTACGTGTACAGGTCAGAGATTCTGGATCTGGTAT
TAGCCCTCAAGATATTCCAAATTTATTTACAAAATTTGCACAAAATCAAG
CAATTGCACTAAGAAATTCTAGTGGCAGTGGACTTGGCCTGGCAATTTGT
AAGAGGTTTGTGAATCTTATGGAGGGACATATCTGGATTGAAAGTGAAGG
TCTTGGAAAGGGTTGTACTGCCATCTTCATTGTAAAACTTGGGATTCCGG
AGCACTCAAATGATTCTAACCTCTCCTTTATTCCAAAAATGCCGTGTTAG
CAGGTCAGTGACTAAGGGACTTCTGTTGCACCTGGGATGTGATGTAATGA
CGGTGAGCTCTGTTGAGGAGTGCTTCCAAGTTGTTTCTCACGAACACCAG
GTGGTCTTCATGGACGTTTGCGTGCCTGGAATTGATGGTTATGAAGTCGC
TGTCCATATACAT
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