FC870998

Overview
NameFC870998
Unique NameFC870998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC870998 vs. ExPASy Swiss-Prot
Match: RS28_CAEEL (40S ribosomal protein S28 OS=Caenorhabditis elegans GN=rps-28 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:  104 AVVVKVMGRTGSRGQVTQVRVKFLDDQ-NRFIMRNVKGPVREGDI 235
            A V KV+GRTGS+GQ TQVRV+F++DQ NR I+RNVKGPVREGDI
Sbjct:    7 ARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDI 51
The following BLAST results are available for this feature:
BLAST of FC870998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS28_CAEEL7.813e-1175.5640S ribosomal protein S28 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1BA11ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA1BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870998 ID=FC870998; Name=FC870998; organism=Citrus clementina; type=EST; length=521bp
GGGGGCTCCGTTGCAAGAACTGCTGAAAGAAATTAGCAGCCGCTTCTGTC
ACCTTCTCTCTCTTCTCGCCTCTTTGCTCAGAATGGATTCTCAGATTAAG
CACGCTGTGGTGGTGAAAGTCATGGGCCGCACTGGTTCAAGAGGACAGGT
TACTCAAGTGAGAGTCAAGTTTTTAGATGATCAGAACCGATTCATCATGA
GGAATGTGAAGGGACCCGTTAGAGAAGGTGATATCCTCACTTTGCTCGAG
TCTGAGAGAGAAGCTAGGAGGCTCCGTTGAAGAGTCCATCTCTGGTCATA
CTATCTCAAACTTTTTGTTGGAAACTAGGGTTCATTACTGTTGTTTTTAG
TAGGCTAGTGATTGGCAATGTTATGAGTTTCACAACTTATTTTGAAGGTT
TTCATATTAAGACTGGGTTTTGAGCCATGAATTATATGTTTTGGGATGTT
TAATATCGTTCTCATTGAAATGGAGTTAAATTTGCTTTAAACAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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