FC871032 | Citrus Genome Database

Overview


Name	FC871032
Unique Name	FC871032
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	529

Libraries


Library Name	Type
AbsAOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_HUMAN (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_CRIGR (40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_CHICK (40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_BOVIN (40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 2.137e-35
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_WUCBA (40S ribosomal protein S13 OS=Wuchereria bancrofti GN=RPS13 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.061e-34
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KI+RILKA G+APEIPEDLYHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+TAS LV+
Sbjct:   66 VTGNKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_BRUPA (40S ribosomal protein S13 OS=Brugia pahangi GN=RPS13 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.061e-34
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KI+RILKA G+APEIPEDLYHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+TAS LV+
Sbjct:   66 VTGNKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESSTASALVS 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_SPOFR (40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.385e-34
Identity = 72/86 (83.72%), Postives = 78/86 (90.70%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+TAS LVA
Sbjct:   66 VTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 151

[Close]

BLAST of FC871032 vs. ExPASy Swiss-Prot
Match: RS13_ICTPU (40S ribosomal protein S13 OS=Ictalurus punctatus GN=rps13 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.385e-34
Identity = 71/86 (82.56%), Postives = 79/86 (91.86%), Query Frame = 1

Query:    7 VTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 264
            VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLILVESRIHRLARYYK  + L P WKYES+TAS LVA
Sbjct:   66 VTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILVESRIHRLARYYKTKRVLAPNWKYESSTASALVA 151

The following BLAST results are available for this feature:

BLAST of FC871032 vs. ExPASy Swiss-Prot

BLAST of FC871032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76


Match Name	E-value	Identity	Description
RS13_RAT	2.137e-35	82.56	40S ribosomal protein S13 OS=Rattus norvegicus GN=...	[more]
RS13_MOUSE	2.137e-35	82.56	40S ribosomal protein S13 OS=Mus musculus GN=Rps13...	[more]
RS13_HUMAN	2.137e-35	82.56	40S ribosomal protein S13 OS=Homo sapiens GN=RPS13...	[more]
RS13_CRIGR	2.137e-35	82.56	40S ribosomal protein S13 OS=Cricetulus griseus GN...	[more]
RS13_CHICK	2.137e-35	82.56	40S ribosomal protein S13 OS=Gallus gallus GN=RPS1...	[more]
RS13_BOVIN	2.137e-35	82.56	40S ribosomal protein S13 OS=Bos taurus GN=RPS13 P...	[more]
RS13_WUCBA	1.061e-34	82.56	40S ribosomal protein S13 OS=Wuchereria bancrofti ...	[more]
RS13_BRUPA	1.061e-34	82.56	40S ribosomal protein S13 OS=Brugia pahangi GN=RPS...	[more]
RS13_SPOFR	1.385e-34	83.72	40S ribosomal protein S13 OS=Spodoptera frugiperda...	[more]
RS13_ICTPU	1.385e-34	82.56	40S ribosomal protein S13 OS=Ictalurus punctatus G...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAA3AA09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3AA09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC871032 ID=FC871032; Name=FC871032; organism=Citrus clementina; type=EST; length=529bp
GGGAGTGTTACTGGGAGCAAAATTTTGAGGATACTTAAGGCTCATGGGCT
TGCTCCTGAAATTCCTGAGGACTTGTACCACCTCATCAAGAAAGCAGTCG
CTATTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTT
AGGTTGATCTTGGTTGAGAGCAGAATCCACAGACTGGCTCGCTACTACAA
GAAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCA
GCACTCTCGTGGCATAGGTGAGATATATTTGGTACCACATTTGGAACTTC
CAGGATCGTATCTTTGACAAGTGGCCTCAAGTTTTTTCCTTATTTATTGT
TATTCCTTTTATAACGACTTTATGCGAGAAGAGTGAGCTGAATCGATTAG
GGCGGAAATGACGTTTGATGTATTGGACTAGTTCATCATTTGTTCTCTCT
GGATCCTTTTGTTTCTATTTTTGGTACTTTTGAAATTATGATTCTTAGAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA