FC871933

Overview
NameFC871933
Unique NameFC871933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length796
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU1_THET8 (Elongation factor Tu-A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufA PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.501e-22
Identity = 80/236 (33.90%), Postives = 111/236 (47.03%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLDALDN-INEPKRPSD 794
            + K H+N+  IGHVD GK+T T  L Y                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +  S       + R+        +W  K   LLDA+D  I  P R  D
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAALTYVA--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVD 219          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_YEAST (Elongation factor Tu, mitochondrial OS=Saccharomyces cerevisiae GN=TUF1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 76/230 (33.04%), Postives = 111/230 (48.26%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKR 785
            + K H+NI  IGHVD GK+T T  +   L              AA+       YA  +DK   ER RGITI  A  ++ET K + + +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D           + +  E+   L + G++ +  P +    +   EG     R   +       LLDA+D  I  P+R
Sbjct:   44 RSKPHVNIGTIGHVDHGKTTLTAAITKTL--------------AAKGGANFLDYA-AIDKAPEERARGITISTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHIVVFVNKVDTID---DPEMLELVEMEMRELLNEYGFDGDNAPIIMGSALCALEG-----RQPEIGEQAIMKLLDAVDEYIPTPER 243          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_STRMU (Elongation factor Tu OS=Streptococcus mutans GN=tuf PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 71/204 (34.80%), Postives = 101/204 (49.51%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIE 710
            + K H+NI  IGHVD GK+T T  +          V+ R    A    K        +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD   E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSAVNQPKDYSS----IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKYLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDIPVIQGSALKALEGDTAQE 189          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_RICSI (Elongation factor Tu OS=Rickettsia sibirica GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSD 794
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATD 208          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_RICRS (Elongation factor Tu OS=Rickettsia rickettsii (strain Sheila Smith) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSD 794
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATD 208          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_RICRO (Elongation factor Tu OS=Rickettsia rickettsii (strain Iowa) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSD 794
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATD 208          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_RICRI (Elongation factor Tu OS=Rickettsia rickettsii GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSD 794
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATD 208          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_RICPU (Elongation factor Tu OS=Rickettsia peacockii (strain Rustic) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSD 794
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATD 208          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_RICCN (Elongation factor Tu OS=Rickettsia conorii GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSD 794
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATD 208          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_RICCK (Elongation factor Tu OS=Rickettsia canadensis (strain McKiel) GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.878e-22
Identity = 74/236 (31.36%), Postives = 113/236 (47.88%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSD 794
            + K H+NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVRATD 208          
The following BLAST results are available for this feature:
BLAST of FC871933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_THET84.501e-2233.90Elongation factor Tu-A OS=Thermus thermophilus (st... [more]
EFTU_YEAST5.878e-2233.04Elongation factor Tu, mitochondrial OS=Saccharomyc... [more]
EFTU_STRMU5.878e-2234.80Elongation factor Tu OS=Streptococcus mutans GN=tu... [more]
EFTU_RICSI5.878e-2231.36Elongation factor Tu OS=Rickettsia sibirica GN=tuf... [more]
EFTU_RICRS5.878e-2231.36Elongation factor Tu OS=Rickettsia rickettsii (str... [more]
EFTU_RICRO5.878e-2231.36Elongation factor Tu OS=Rickettsia rickettsii (str... [more]
EFTU_RICRI5.878e-2231.36Elongation factor Tu OS=Rickettsia rickettsii GN=t... [more]
EFTU_RICPU5.878e-2231.36Elongation factor Tu OS=Rickettsia peacockii (stra... [more]
EFTU_RICCN5.878e-2231.36Elongation factor Tu OS=Rickettsia conorii GN=tuf ... [more]
EFTU_RICCK5.878e-2231.36Elongation factor Tu OS=Rickettsia canadensis (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DE11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871933 ID=FC871933; Name=FC871933; organism=Citrus clementina; type=EST; length=796bp
GGGGACTCTTTTACAATACACTCTCTCAATTTCCGAAGGGCGGCGAGAGA
GAACCATTTTCGCGAATATCATTTTAATAAGGTTTTTTCTAGATTTGCCT
AATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCG
ACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGT
ATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAA
CAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCTTTGTGGAAGTTCGAGACCACC
AAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCTGTCCTCATCATTG
ACTCTACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAA
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