FC871933

Overview
NameFC871933
Unique NameFC871933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length796
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTU (Elongation factor Tu OS=Mycobacterium tuberculosis GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 81/233 (34.76%), Postives = 119/233 (51.07%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSD 794
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETD 209          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTA (Elongation factor Tu OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 81/233 (34.76%), Postives = 119/233 (51.07%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSD 794
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETD 209          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBT (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 81/233 (34.76%), Postives = 119/233 (51.07%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSD 794
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETD 209          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 81/233 (34.76%), Postives = 119/233 (51.07%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSD 794
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETD 209          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 81/233 (34.76%), Postives = 119/233 (51.07%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSD 794
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETD 209          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 71/226 (31.42%), Postives = 111/226 (49.12%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF------EGDNMIERSTNLDWY-KGPTLLDALD 764
            ++K H+NI  IGHVD GK+T T  +   L   +    ++F++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +PFV  S          +N I+R  N +W  K  +L+DA+D
Sbjct:    8 RKKPHVNIGTIGHVDHGKTTLTAAISATLAAANDTKAKKFDE---------------IDAAPEEKARGITINTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNVVVFLNKQDQVD---DEELLELVELEVRELLIQYDFPGDDIPFVAGSALLALEKVTENNSIQRGEN-EWVDKIHSLMDAVD 207          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_FRAAA (Elongation factor Tu OS=Frankia alni (strain ACN14a) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 76/236 (32.20%), Postives = 111/236 (47.03%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSD 794
            + K H+NI  IGH+D GK+T T  +   L               A  +   F     +DK   E+ RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D       +   + +  EV   L    +  + VP + +S     EGD         +W  G  LL+ +    D+I EP+R  D
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTAAITKVL-------------HDAHPDLNPFTPFDQIDKAPEEKARGITISIAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVD---DEEILELVELEVRELLSSYEFPGDDVPVIRVSALKALEGDK--------EW--GAKLLELMAAVDDSIPEPQRDID 210          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_ERYLH (Elongation factor Tu OS=Erythrobacter litoralis (strain HTCC2594) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 73/233 (31.33%), Postives = 114/233 (48.93%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSD 794
            + K H N+  IGHVD GK+T T         I K + + +   A +           +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LL+  +GV  ++   NK+D       +   + +  EV   L +  ++ + +P V    ++  EG     R  N+       L+ A+D +I +P+RP D
Sbjct:    8 RNKPHCNVGTIGHVDHGKTTLTA-------AITKVMADVYGGSAVDFAN--------IDKAPEERERGITISTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLSRQVGVPALVVYLNKVDQVD---DEELLELVELEVRELLSEYDFDGDNIPIVKGSALAALEG-----RDDNIGKESIVELMKAVDEHIPQPERPVD 210          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_BORRA (Elongation factor Tu OS=Borrelia recurrentis (strain A1) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 64/194 (32.99%), Postives = 101/194 (52.06%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF 689
            + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F
Sbjct:    8 RTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PSDTPIVKGSAF 175          
BLAST of FC871933 vs. ExPASy Swiss-Prot
Match: EFTU_BORDL (Elongation factor Tu OS=Borrelia duttonii (strain Ly) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.234e-21
Identity = 64/194 (32.99%), Postives = 101/194 (52.06%), Query Frame = 3
Query:  108 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF 689
            + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F
Sbjct:    8 RTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PSDTPIVKGSAF 175          
The following BLAST results are available for this feature:
BLAST of FC871933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCTU2.234e-2134.76Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCTA2.234e-2134.76Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCBT2.234e-2134.76Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBP2.234e-2134.76Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBO2.234e-2134.76Elongation factor Tu OS=Mycobacterium bovis GN=tuf... [more]
EFTU_GRATL2.234e-2131.42Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_FRAAA2.234e-2132.20Elongation factor Tu OS=Frankia alni (strain ACN14... [more]
EFTU_ERYLH2.234e-2131.33Elongation factor Tu OS=Erythrobacter litoralis (s... [more]
EFTU_BORRA2.234e-2132.99Elongation factor Tu OS=Borrelia recurrentis (stra... [more]
EFTU_BORDL2.234e-2132.99Elongation factor Tu OS=Borrelia duttonii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DE11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871933 ID=FC871933; Name=FC871933; organism=Citrus clementina; type=EST; length=796bp
GGGGACTCTTTTACAATACACTCTCTCAATTTCCGAAGGGCGGCGAGAGA
GAACCATTTTCGCGAATATCATTTTAATAAGGTTTTTTCTAGATTTGCCT
AATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCG
ACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGT
ATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAA
CAAGAGGTCATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCTTTGTGGAAGTTCGAGACCACC
AAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCTGTCCTCATCATTG
ACTCTACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAA
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