FC871952

Overview
NameFC871952
Unique NameFC871952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX1_YEAST (RING-box protein HRT1 OS=Saccharomyces cerevisiae GN=HRT1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.619e-35
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 445
            RFEIKKW+AVA W+WDI VDNCAICRNHIM+ CIECQ    + T  EC  AWGVCNHAFH HCI++W+KTR  CPLDN  W+  + G
Sbjct:   34 RFEIKKWTAVAFWSWDIAVDNCAICRNHIMEPCIECQPKAMTDTDNECVAAWGVCNHAFHLHCINKWIKTRDACPLDNQPWQLARCG 120          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX2_MOUSE (RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  188 FEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 445
            F +KKW+AVA+W+WD+  D CAICR  +MD C+ CQA       E+C V WG CNH+FH  C+S W+K    CPL   +W  Q+ G
Sbjct:   30 FSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: RBX2_HUMAN (RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.141e-22
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  188 FEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 445
            F +KKW+AVA+W+WD+  D CAICR  +MD C+ CQA       E+C V WG CNH+FH  C+S W+K    CPL   +W  Q+ G
Sbjct:   30 FSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAEN---KQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 112          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: APC11_DICDI (Anaphase-promoting complex subunit 11 OS=Dictyostelium discoideum GN=anapc11 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  203 WSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNSEWEFQ 436
            W+ V+ W WD+  + C ICR      C++C+        ++C   WGVCNHAFH HCI +WL     Q CP+  SEW F+
Sbjct:    9 WNTVSAWHWDVNEECCGICRMAFDGCCVDCKI-----PGDDCPPVWGVCNHAFHMHCILKWLNANELQQCPMCRSEWRFK 83          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: APC11_BOVIN (Anaphase-promoting complex subunit 11 OS=Bos taurus GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 439
            R +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 RVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: APC11_MOUSE (Anaphase-promoting complex subunit 11 OS=Mus musculus GN=Anapc11 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 439
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLNAQQVQQHCPMCRQEWKFKE 84          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: APC11_PONAB (Anaphase-promoting complex subunit 11 OS=Pongo abelii GN=ANAPC11 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 439
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84          
BLAST of FC871952 vs. ExPASy Swiss-Prot
Match: APC11_HUMAN (Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 2
Query:  185 RFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV---CPLDNSEWEFQK 439
            + +IK W+ VA W W    +NC ICR      C +C+        ++C + WG C+H FH HCI +WL  +QV   CP+   EW+F++
Sbjct:    2 KVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKV-----PGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84          
The following BLAST results are available for this feature:
BLAST of FC871952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RBX1_YEAST7.619e-3566.67RING-box protein HRT1 OS=Saccharomyces cerevisiae ... [more]
RBX2_MOUSE1.141e-2248.84RING-box protein 2 OS=Mus musculus GN=Rnf7 PE=2 SV... [more]
RBX2_HUMAN1.141e-2248.84RING-box protein 2 OS=Homo sapiens GN=RNF7 PE=1 SV... [more]
APC11_DICDI1.765e-1541.25Anaphase-promoting complex subunit 11 OS=Dictyoste... [more]
APC11_BOVIN3.010e-1538.64Anaphase-promoting complex subunit 11 OS=Bos tauru... [more]
APC11_MOUSE6.706e-1537.50Anaphase-promoting complex subunit 11 OS=Mus muscu... [more]
APC11_PONAB8.758e-1537.50Anaphase-promoting complex subunit 11 OS=Pongo abe... [more]
APC11_HUMAN8.758e-1537.50Anaphase-promoting complex subunit 11 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DF09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871952 ID=FC871952; Name=FC871952; organism=Citrus clementina; type=EST; length=667bp
GGGGGGGAATCATTCGTTTGTTTTGCCATCTTTTCTTTCTGTAGAGACCT
AAACAAGCGTTCGTTGTTGGGTTTCCACAAGAATCGAGAAAAAAATGGCG
ACCTTGGACTCAGACGTACCGATGGTTCCAGTCGGAGAGGCATCAAGCAG
TGCAGGCCCTTCATCTTCCTCCAAGAAGCCTAAACGTTTCGAGATCAAAA
AGTGGAGCGCCGTCGCCCTCTGGGCTTGGGATATTGTTGTCGATAATTGT
GCGATTTGCAGGAACCACATCATGGATCTCTGCATCGAGTGCCAGGCTAA
CCAAGCTAGCGCTACAAGCGAGGAATGCACTGTAGCTTGGGGGGTTTGCA
ACCATGCATTTCACTTTCACTGCATCAGTCGATGGCTGAAGACTCGTCAA
GTTTGTCCATTGGATAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTA
GAGCCTTTGAGCCAGTTGAGTTTTGGATTCTGTCTGCTATGTATTGCAGA
TTTCAAGTAGATATTATGGAAGACCCTGGACTTTCTGTCAATTCTATTTG
ATGCTCTTTGTTATCTAAAATTCAGTTGGTTATGACTTGGATTCTAAATC
CTATATATGTTTGTGAAAATTAAGCCATAATTTCTGTTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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