FC871957

Overview
NameFC871957
Unique NameFC871957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871957 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.686e-24
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  206 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            D  A S  Y+HIR+QQRNGRK+LTTVQG+ +E+   + LK L+K+F CNG +V+D E+G++IQLQGDQR  V  FL+    + K++IK+HGF
Sbjct:   17 DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
BLAST of FC871957 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 6.287e-24
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  206 DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            D  A     +HIR+QQRNGRK+LTTVQGL +EF   + L+ LKK+F CNGT+V+D +LG+VIQLQGDQR  V  FL Q   ++K++IK+HGF
Sbjct:   18 DDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of FC871957 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.186e-22
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  245 VQQRNGRKSLTTVQGLKKEFSYNKTLKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 481
            +QQRNGRK+LTTVQG+  ++   K +K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of FC871957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_ASHGO3.686e-2454.35Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_SCHPO6.287e-2457.61Protein translation factor sui1 OS=Schizosaccharom... [more]
EIF1_CHICK1.186e-2258.23Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DG05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871957 ID=FC871957; Name=FC871957; organism=Citrus clementina; type=EST; length=593bp
GGGGGAGCTTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATCT
TATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGTC
TGAGCATTCCGGTTGTTGGGCCCCTTGCATCAGCTGAGGTTCATGTCTGA
TTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTGATGCAAAGG
CTGAGGACTCAGGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCAG
CAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAGA
ATTTAGTTACAACAAAACCCTCAAGGACCTCAAAAAGGAATTTTGCTGCA
ATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCAA
GGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGCTGGGATTGT
GAAGAAGGAACATATCAAAATGCATGGCTTTTAAGTAAACAGCAACTTCC
GTTTCTGCACATTTGGTGACCCGCGTTCGTCAGTGCAGTGCAGAACATGC
TATTGATACTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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