FC872016

Overview
NameFC872016
Unique NameFC872016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9827 contig Ccv1_Contig9827:1..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 3.721e-45
Identity = 96/192 (50.00%), Postives = 132/192 (68.75%), Query Frame = 2
Query:  233 QYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            Q D+K+F +W  + V++ D SL  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN GKK +A  IVK A +II+L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD+SP RR++ A+  + TGA++++F N K I E LA+E+I AA   S S+AIK+K+EIER+A ++R
Sbjct:    7 QLDIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPREEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAANNDSKSFAIKRKEEIERIALSSR 193          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.721e-45
Identity = 96/189 (50.79%), Postives = 125/189 (66.14%), Query Frame = 2
Query:  242 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            V LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +II+  T QNPIQV+VDA+IN  PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADE+I AA     SYA++K++E+ER+A A+R
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPREEVTRIIMGGIAYTVSVDVSPQRRLDLALRWITEGARTCSFNNPKPIEECLADEIIAAASNDPRSYAVRKREELERIAAASR 224          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.083e-44
Identity = 96/190 (50.53%), Postives = 131/190 (68.95%), Query Frame = 2
Query:  239 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            D+K+F +W  + V++ D SL  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN GKK++A  IVK A +II L T QNPIQV+V A+ NS PRE+ TRI   G+V   AVD++P RRV+ A+  L  GA+E++F N K I E LA+E+I AA     S+AI+KK+EIER+A ++R
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVMGAKEASFNNPKPIEEALAEEIIAAASNDPKSFAIRKKEEIERIALSSR 194          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_DESMO (30S ribosomal protein S7P OS=Desulfurococcus mobilis GN=rps7p PE=3 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.150e-44
Identity = 91/190 (47.89%), Postives = 129/190 (67.89%), Query Frame = 2
Query:  239 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            ++KLFN+W+++ ++V D SL  YI ++      Y+PHT GR+  +RF K   PIVERL N +M  GRN GKK +A  IVK A +IIH+ T +NPIQV+V A+ N+ PRE+ TRI   G+    +VD++PLRR++ A+  LT GAR  AF +   I E LA+E++ AA     SYAI+KK+EIER+A ++R
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNMGKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAFHSPIPIEEALAEEIVLAASNDPKSYAIQKKEEIERIALSSR 198          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.114e-44
Identity = 92/187 (49.20%), Postives = 124/187 (66.31%), Query Frame = 2
Query:  248 LFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            LF +W+FE+V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A +I++  T QNPIQV +DA++N+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADEL+ AA     SYA++K++E+ER+A A+R
Sbjct:   42 LFGKWSFENVVVRDPGLRRYICLKPV----VLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADELVAAAANDPKSYAVRKREELERIAAASR 224          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.114e-44
Identity = 92/191 (48.17%), Postives = 132/191 (69.11%), Query Frame = 2
Query:  236 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            Y++K+F +W   +V+V D  L DYI ++      Y+PHT GR++ KRF KA+ PIVERL N +M   +N GKK +A  IVK A +IIH  T +NPIQV+V A+ N+ PRE+ T I   G+   +AVD SP RR++ A+ L+T GA++ AFRN K I ECLA+E+I AA+  +  ++I++K+EIER+A+A R
Sbjct:   11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALRLITEGAQQRAFRNPKPIEECLAEEIIAAARYDTECHSIRRKEEIERIAEAAR 197          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.373e-44
Identity = 91/189 (48.15%), Postives = 125/189 (66.14%), Query Frame = 2
Query:  242 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            + LF +W++EDV V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN GKK  A  IVK A ++I+  T +NP+QV +DA+IN+ PRE+ TRI   G+    +VD+SP RR++ A+  +T GAR  +F N K I ECLADE+I AA     SYA++K++E+ER+A A+R
Sbjct:   39 ILLFGKWSYEDVVVRDPGLRRYICLKPV----ILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSVDVSPQRRLDLALRWITEGARACSFNNPKPIEECLADEIIAAAANDPKSYAVRKREELERIAAASR 223          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.017e-44
Identity = 95/191 (49.74%), Postives = 131/191 (68.59%), Query Frame = 2
Query:  239 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGS-SNSYAIKKKDEIERVAKANR 808
            ++K+F RW+ +DV V D  L +YI +       YVPHTAGRY+ ++F KA+  IVERL N +M    N GKKL A++IV++A EII   T QNPIQV+VDA+ N+GPRED TRI   G+V  Q+VD S LRR++ A+  +  GA  +A ++ K I E LA+E+I AA+G    SYA++KK+E ERVA++ R
Sbjct:    5 EIKVFGRWSTKDVVVKDPGLRNYINLTPI----YVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPREDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKKPIEEALAEEIIAAARGDMQKSYAVRKKEETERVAQSAR 191          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.165e-44
Identity = 91/190 (47.89%), Postives = 131/190 (68.95%), Query Frame = 2
Query:  239 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            ++KLFN+W+++ ++V D SL  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN GKK +A  IVK + E+I+L T +NP+QV+V A+ N+ PRE+ TRI   G+    +VDI+PLRR++ A+  LT GAR  AF N  +I E LA+E+  AA     SYA++KK+EIER+A ++R
Sbjct:   13 EIKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPREETTRIMYGGITYHVSVDIAPLRRIDLALRHLTEGARLKAFHNPISIEEALAEEIALAASNDPKSYAVQKKEEIERIALSSR 198          
BLAST of FC872016 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.013e-42
Identity = 94/190 (49.47%), Postives = 130/190 (68.42%), Query Frame = 2
Query:  239 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 808
            +VK+F +W  + V+V D SL  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN GKK++A  IVK   +II + T QNPIQV+V A+ N+ PRE+ TRI   G+V   AVD++P RRV+ A+  L TGA E++F N K I E LA+E+I AA   + S AI+KK+EIER+A ++R
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPKPIEEALAEEIIAAANNDNKSVAIRKKEEIERIALSSR 195          
The following BLAST results are available for this feature:
BLAST of FC872016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS7_SULSO3.721e-4550.0030S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS7_PYRIL3.721e-4550.7930S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_SULTO1.083e-4450.5330S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_DESMO3.150e-4447.8930S ribosomal protein S7P OS=Desulfurococcus mobil... [more]
RS7_THENV4.114e-4449.2030S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_METKA4.114e-4448.1730S ribosomal protein S7P OS=Methanopyrus kandleri... [more]
RS7_PYRAE5.373e-4448.1530S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_METJA7.017e-4449.7430S ribosomal protein S7P OS=Methanocaldococcus ja... [more]
RS7_DESK19.165e-4447.8930S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_SULAC1.013e-4249.4730S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2BE01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872016 ID=FC872016; Name=FC872016; organism=Citrus clementina; type=EST; length=933bp
GGGGGTCTCCCAACACTCAGAAGAGAACTCAGCGAGCGGCTGCCGATTCT
TATTATTCCTTTTTCAAACCCCTTCAGACAAACTAACGCACGCTTTCTTT
TTCTTCCGCTTTCTTCTCCATCGCTGATCATCTTGATTGCATTTTTAGTT
CGAAAAACATTGTCTTTTAATATTTTGTTGTGTAGGAATGGCGACTGCTG
TAGTGGCACAATCTCAAGACCCATCACAGCCTCAATACGATGTGAAGCTC
TTCAATAGGTGGACTTTTGAGGATGTTCAGGTCAATGACATCTCGTTGAG
TGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATGTGCCTCACA
CTGCTGGGAGGTACTCAGCTAAGCGCTTTCGGAAGGCCCAATGTCCCATT
GTTGAGAGGCTTACGAACTCTCTAATGATGCACGGTCGTAACAATGGCAA
GAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAAATCATTCACC
TTTTGACTGACCAGAACCCAATTCAAGTCATTGTTGATGCTGTCATCAAC
AGTGGTCCAAGGGAAGATGCTACCCGCATTGGATCTGCTGGCGTTGTTAG
GCGTCAGGCTGTTGATATTTCCCCATTGCGCCGTGTGAATCAAGCGATCT
ATTTGCTCACCACTGGTGCTCGTGAATCCGCTTTCCGTAATGTCAAGACT
ATTGCGGAATGTTTGGCCGATGAACTCATTAATGCTGCCAAGGGTTCATC
TAACAGCTATGCCATCAAGAAGAAGGATGAGATCGAGCGAGTTGCTAAGG
CCAATCGCTGAACTTTGGACAATGTTTTGTTTTTTATTTTTATTTTCTCA
AACTTTGGACAATGTTTTGTCTCTATTTTTGGCGGATATTTATTATGATC
ATTTATTTACTTTAAAATAAATAAAGGTAAAAA
back to top