FC872021

Overview
NameFC872021
Unique NameFC872021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9597 contig Ccv1_Contig9597:123..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.365e-11
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            F  D RSSIFDA AGI L+  F K+VSWY+NEWGYS RV+DL++ MA
Sbjct:  287 FRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMA 333          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F  +S SS FDA AGIAL+  FVKL+SWY+NE+GYS RVVDL+ +MA  +
Sbjct:  284 FNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKTQ 151
            F  +S SS FDA AGIAL+  FVKL+SWY+NE+GYS RVVDL+ +MA  +
Sbjct:  284 FNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            FV D+ SSIFDA A I+L+  FVKLVSWY+NE+GYS RVVDLI ++A
Sbjct:  292 FVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.701e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            FV D+ SSIFDA A I+L+  FVKLVSWY+NE+GYS RVVDLI ++A
Sbjct:  292 FVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F GD+R+SIFDA+AGIAL   F+K+VSWY+NEWGYS +V+++   +AK
Sbjct:  285 FRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEMARVVAK 332          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 28/46 (60.87%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHM 139
            F+GD+ SS+FDA AGI+ +  FVKL+SWY+NE+GYS RV DL+++M
Sbjct:  286 FIGDTHSSMFDAGAGISFNDNFVKLISWYDNEFGYSHRVADLLLYM 331          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            FV D+ SSIFDA A I L+  FVKL+SWY+NE+GYS RVVDLI ++A
Sbjct:  292 FVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            FV D+ SSIFDA A I L+  FVKL+SWY+NE+GYS RVVDLI ++A
Sbjct:  292 FVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
The following BLAST results are available for this feature:
BLAST of FC872021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
G3P1_SYNY34.365e-1165.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_RAT5.701e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_MOUSE5.701e-1162.00Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P3_CAEEL5.701e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL5.701e-1168.09Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_RALSO7.446e-1160.42Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_ONCMY7.446e-1160.87Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P3_CAEBR9.725e-1165.96Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEBR9.725e-1165.96Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2BE08ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872021 ID=FC872021; Name=FC872021; organism=Citrus clementina; type=EST; length=511bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATAACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGA
GAAAACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTA
GTATCGAAGACCTGTTCTTCAGCCGTTAAAAAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
back to top