FC872021

Overview
NameFC872021
Unique NameFC872021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9597 contig Ccv1_Contig9597:123..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.571e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            G+  SSIFDAKAGI+L+  FVKLVSWY+NEWGYS RV+DLI H+AK
Sbjct:  287 GNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.571e-13
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMA 142
            F GD+ SSIFDA AGI LS +FVKLVSWY+NEWGYS RVVDL+ + A
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.571e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGI LS KFVKLV+WY+NE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.664e-13
Identity = 31/46 (67.39%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            G++ SSIFDAKAGI+L+K FVKL++WY+NEWGYS RV+DL+ ++AK
Sbjct:  287 GNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAKT 148
            F+GD+ SSI DA AGI L+  FVKLVSWY+NE+GYSTRVVDL+ H+AK+
Sbjct:  284 FLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGI LS +FVKLVSWY+NE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGI LS +FVKLVSWY+NE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            +G++ SSIFD KAGI+L+  FVKLVSWY+NEWGYS RV+DL+ H+AK
Sbjct:  286 LGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            G+  SSIFDAKAGI+L+K FVKLVSWY+NEWGYS RV+DLI +++K
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISK 332          
BLAST of FC872021 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYNNEWGYSTRVVDLIVHMAK 145
            F+G   SSIFD KAGI LS  FVKL+SWY+NE+GYSTRVVDL+ H+AK
Sbjct:  285 FLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
The following BLAST results are available for this feature:
BLAST of FC872021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
G3P_CRYPA3.571e-1373.91Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P2_SCHPO3.571e-1372.34Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_KLULA3.571e-1372.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_CLAPU4.664e-1367.39Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_ZYGRO6.092e-1369.39Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P3_KLUMA6.092e-1372.92Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA6.092e-1372.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_TRIAT7.956e-1368.09Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_NEUCR7.956e-1371.74Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_DEBHA7.956e-1370.83Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BE08ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872021 ID=FC872021; Name=FC872021; organism=Citrus clementina; type=EST; length=511bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATAACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAAG
TGTGGTGTTTCTTTGCGCTAAATGTGGTGTTTCTTTGCGCTAAATGTGGT
GTTTGTGTTTCTATGTAGAGGGTCTGAGTTTAAATAAAATTGTTTCCAAG
ACATTATCCAGAGCCTTACCTGCTCATGCAGGGTTGTGCTTAGATTTTCC
CTTGTAGTATGCAAGAAGAGTTGGTGAACCAACTTATGTTTTGTTAGCGA
GAAAACAATTGTCTATTGGAAACTTGCTTTTATAATTTTTCATCTAGTTA
GTATCGAAGACCTGTTCTTCAGCCGTTAAAAAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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