FC872073

Overview
NameFC872073
Unique NameFC872073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872073_ssr5 microsatellite FC872073_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9851 contig Ccv1_Contig9851:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGS 393
            K +  +E+ KHN+    WL++  KVY++T FLE+HPGG+EVL      DAT++FEDVGHS  AREM + + IGE+     P   K  PP+  + + + + S
Sbjct:   10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNK--PPETLITTIDSSSS 108          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   82 RMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDT 387
            +  K +  +E+ KHNN    WL++  KVY++T FLE+HPGG+EVL      DAT++FEDVGHS  ARE+ + + IGE+       + K T P +++ +  D+
Sbjct:    7 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD---RSKITKPSESIITTIDS 105          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVP 333
            K +  +E+ KHN+    WL++  KVY++T FLE+HPGG+EVL      DAT+DFEDVGHS  ARE+ + Y IGE+     P
Sbjct:    6 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGELHPDDRP 86          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   82 RMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI--DSSSVPAKRKYTPPQQAVNSPEDTGS 393
            +  K +  +E+ KHNN    WL++  KVY++T FLE+HPGG+EVL      DAT++FEDVGHS  ARE+ + + IGE+  D  S  AK    P +  + + E   S
Sbjct:    7 KAVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDRSKIAK----PSETLITTVESNSS 108          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 43/131 (32.82%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   82 RMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKE 474
            +  K +  +E+ KHN+    WL++  KVY++T FLEDHPGG+EVL      DAT++FED+GHS  ARE+ + + IGE+       + K   P + + +  D+ S+      +  +  + +A  +R ++ ++
Sbjct:    7 KAVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGELHPDD---RSKIAKPVETLITTVDSNSSWWTNWVIPAISAVVVALMYRIYTAED 134          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSA 396
            K +  +E+ KHN+    WL++  KVY++T FLE+HPGG+EVL      DAT++FEDVGHS  ARE+ + + IGE+       + K + P + + +  D+ S+
Sbjct:   10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD---RSKLSKPMETLITTVDSNSS 108          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   58 SSS*NSQKRMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKEE 477
            SS    +    + +  +EV KHNN    W+++  ++Y++T FL++HPGG+EVL      DAT++FEDVGHS  AR + E + IGE+     P  +K  P +  + + +   S+     +++P  I  I  A  Y S   E
Sbjct:    4 SSEAGGEAWRGRYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGELHPDDRPKLQK--PAETLITTVQSNSSSWS--NWVIP-AIAAIIVALMYRSYMSE 138          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPM 426
            +K +   EV +HNN D  W+++ G VY+ T FL+DHPGG + +L     D T++FE + HSD A++M+E Y IGE+ ++   +    + P  +V+   DT     I + + PM
Sbjct:  517 SKTYTMSEVRRHNNADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGELTTTCYNSDSSSSNP--SVHGSSDTIPLTPIKEVITPM 626          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKKE 474
            K +  +E+ KH +    W+++  KVY++T FLE+HPGG+EVL      DAT++FEDVGHS  ARE+ + Y IGE+       + K   P   + +  ++ S+      +  +  L +A  +R +  ++
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDD---RSKIAKPSDTLITTVESNSSWWTNWVIPAISALAVALMYRLYMAED 134          
BLAST of FC872073 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   97 HDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNS 375
            +  +EVA HN  + CW V  GKVY+ TP+L++HPGG E +L     DATD+F  + HS  A+ M+ +Y+IG++ +S   A     P  Q V S
Sbjct:  500 YTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVASKPAAAGATVPEPQPVAS 591          
The following BLAST results are available for this feature:
BLAST of FC872073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CYB5_HUMAN5.666e-1842.57Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5_BOVIN1.649e-1741.18Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_ALOSE2.153e-1749.38Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB5_PIG4.796e-1742.45Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_HORSE4.796e-1732.82Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_RABIT8.182e-1740.20Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_CHICK1.396e-1633.57Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
NIA2_SOYBN2.380e-1636.28Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
CYB5_MOUSE5.303e-1632.81Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
NIA_VOLCA6.926e-1641.94Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CC03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872073 ID=FC872073; Name=FC872073; organism=Citrus clementina; type=EST; length=717bp
GGGGGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATAATTCTGATT
CTGCGTGAGCAGTAGCTGAAATAGCCAGAAAAGAATGGCCAAAGTTCATG
ATTTTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTA
ATTTCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGG
TGGTGATGAAGTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACT
TTGAAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATAC
CACATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACAC
TCCACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAA
AGATTCTACAGTTCCTGGTACCGATGTTGATCCTGGGCATAGCATTTGCT
TTCCGTTACTTTTCCAAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAA
ACCGAACCAGATACCTCTTCGTTAGTTTACTACCTATCCTATAGTATTAG
AACTTCAATTGGCACTTGGTATCAGGATTTGTTTTGATACTAAACTATGT
GTAGCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAA
AAGTTATACTGAAGCAATAATACAGCGAAATTGAACGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
back to top