FC872116

Overview
NameFC872116
Unique NameFC872116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length839
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 4.594e-52
Identity = 114/258 (44.19%), Postives = 152/258 (58.91%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVV--DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDP-NQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 770
            G  +T+ + +R+V    G+TT  S TV V  EGF+A+ I F+NTAGP  HQAVA+RV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFIFG +A V+QN  I  RK N GQ N VTA G         GIV+Q  RI     L   +    +YLGRPWK++S TVI+ S I D+I P GW  WDG     +  Y E+ N G GA T+ RV W   ++  SA E   FT  +++   +W+     P +LGL
Sbjct:  340 GARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGNKGQFNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLAAERLIVESYLGRPWKKFSTTVIINSEIGDVIRPEGWKIWDGESFHKSCRYVEYNNRGPGAITNRRVNW--VKIARSAAEVNDFTVANWLGPINWIQEANVPVTLGL 595          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.337e-51
Identity = 99/185 (53.51%), Postives = 126/185 (68.11%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGW 560
            GR  T+ +G  N VDG  TF SAT+AV   GF+A+D+  +NTAGP K QAVALR+  D++  Y C + AYQDTLY +S RQF+ +C I GTVDFIFG AAAV Q C I ARKP  GQ N++TAQ R +    +G   QK  I A+SDL  ++G+  T+LGRPW+ +SR V M+S I D+I  AGW
Sbjct:  102 GRDLTVLSGDLNGVDGIKTFDSATLAVDESGFMAQDLCIRNTAGPEKRQAVALRISTDMTIIYRCRIDAYQDTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.292e-50
Identity = 111/258 (43.02%), Postives = 151/258 (58.53%), Query Frame = 3
Query:    6 GRTRTIFTGSRNV--VDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQ-NTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 770
            G T+TI T  R+V    G+TT  S TV V  EGF+A+ I FQNTAGP  +QAVA RV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFI G +A V+QN  I  RK + GQ N VTA G+        GIV+   RI A  +L+  + +  +YLGRPWK ++ T ++ + I DLI P GW+EW G     T  Y E  N G GA  + RV W   ++  SA E + FT  +++  ++W+        LGL
Sbjct:  316 GATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGNQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.415e-39
Identity = 95/231 (41.13%), Postives = 131/231 (56.71%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            T+ SA+ AV    F+A++ITF+NT      G    QAVALRV AD +AF+ C ML  QDTLY H  R ++ +C I G+VDFIFGNA ++ + C +HA     G    VTAQGR+   ++TG    K ++  T  L         YLGR W  +SR V   + + ++I P GW+ W       T+FYG+++ +GAGA   GRV W   R +T   EA+ F   +FI GS W+
Sbjct:  166 TYNSASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLG---AVTAQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWI 381          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.874e-37
Identity = 85/230 (36.96%), Postives = 123/230 (53.48%), Query Frame = 3
Query:   48 DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            DG    +S T+ +    F+ R +T QN  G +  +AVALRV AD +AFY C + +YQDTL   +   +F NC I G  DFI G+A+++ + C +H+  PN+G    +TAQ RT   + +G      ++          GS  T+LGRPW  YSR V   S  ++++ P GW++W  +   NT++YGE++  G GA    RV+W       S  EA  F    FI G  WL
Sbjct:  119 DGEDILESPTLTIFASDFVCRFLTIQNKFGTAG-RAVALRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGS---ITAQMRTSATEKSGFTFLGCKL---------TGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWS---KQLSDEEATVFLSKDFIGGKDWL 332          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.907e-35
Identity = 80/204 (39.22%), Postives = 113/204 (55.39%), Query Frame = 3
Query:   45 VDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKW 656
            V G+ TF   +V V GE F+A +ITF+N+A     QAVA+RV AD  AFYNC  L +QDTLY+H  +Q+  +C I G+VDFIFGN+ A+L++C IH +      +  +TAQ R    ++TG V  +  I           S   YLGRPW  + R V+  + +   I   GWH W       +  + E++  G G+ +S RV W
Sbjct:   86 VIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCK-----SQGFITAQSRKSSQESTGYVFLRCVITGNGQ------SGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPW 278          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.257e-33
Identity = 89/250 (35.60%), Postives = 127/250 (50.80%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHA-RKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            G +RT    +      + TF S +VAV GE F A +I+F+NTA     G    QAVAL+V  D +AFY C     QDTL     R FF  C I G++DFIFGN  ++ ++C +H+  K N+     +TA G+      TG V    +I          GS   +LGR W+ Y+R +  ++ ++ ++   GW++        T++YGEH+  G GA  S RV    +  + S  EA  FT  SFI G  WL
Sbjct:   98 GYSRTSIEWNNTTASSNGTFSSFSVAVFGEKFTAYNISFKNTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHSIAKENT--IGCITANGKDTLKDRTGFVFVNCKI---------TGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRVT---YAKLLSDVEAAPFTNISFIDGEEWL 333          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.800e-33
Identity = 88/236 (37.29%), Postives = 124/236 (52.54%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI--HARKPNSGQK---NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            TF  ATV V G  F+A++I+F N A     G    QAVA+R+  D SAF  C     QDTL+    R +F +C I G++DFIFGNA ++ Q+C I   A + + G K     VTA GR+  ++N+G       IG T  +         +LGR W+ YSR V + +++TD+I P GW+ ++      T+FYGE+  SG GA  S R     +    + T+       SFI G  WL
Sbjct:  165 TFYCATVQVFGSQFVAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHV---------WLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAP---YVQKLNETQVALLINTSFIDGDQWL 388          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.657e-33
Identity = 84/230 (36.52%), Postives = 114/230 (49.57%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNT----AGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            T+++A+V++  + F A  ITF+NT    AG    QAVALR+  D + FY   +L  QDTL+  +   +F  C I G VDFIFGNA ++ Q+CDIH+     G    + A  R    ++TG       I  T  +         YLGR W  YSRTV     I D+I P GW +W        + +GE+   G GA   GRV W   + +T   E + F    FI G  WL
Sbjct:  164 TYRTASVSIESDFFCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIHSTAKRYG---AIAAHHRDSETEDTGFSFVNCDISGTGQI---------YLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWS--KTLT-RDEVKPFLGREFIYGDQWL 378          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.784e-30
Identity = 83/236 (35.17%), Postives = 115/236 (48.73%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIH--ARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGST 746
            T  S +  V    F A +I+F+N A     G +  QAVALR+  D +AFY C     QDTL     R FF  C I G++DFIFGN  ++ Q+C I+  A+   SG    +TAQGR   ++ +G      +I          GS    LGR W  Y+  V   + ++ +I P GW+ W  +    T+ +GEH+  G GA    RV    F    + +EA +F   SFI G  WL  T
Sbjct:  165 TADSFSFVVFAANFTAYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKI---------DGSGEILLGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVL---FGKQLTDSEASSFIDVSFIDGDEWLRHT 388          
The following BLAST results are available for this feature:
BLAST of FC872116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PME5_ARATH4.594e-5244.19Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME56_ARATH1.337e-5153.51Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME_BRACM3.292e-5043.02Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME53_ARATH3.415e-3941.13Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME11_ARATH1.874e-3736.96Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME31_ARATH3.907e-3539.22Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME14_ARATH1.257e-3335.60Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME8_ARATH2.800e-3337.29Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME62_ARATH3.657e-3336.52Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME15_ARATH3.784e-3035.17Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872116 ID=FC872116; Name=FC872116; organism=Citrus clementina; type=EST; length=839bp
GCGGGGGAAGGACTAGAACTATCTTCACAGGAAGTAGAAATGTGGTTGAT
GGAAGCACAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGATT
CTTGGCCCGAGACATTACGTTCCAAAACACAGCAGGCCCCTCAAAGCACC
AGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAGCATTTTACAATTGC
GATATGTTAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCAGTT
CTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTAATG
CTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAATTCC
GGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCAAAA
CACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATTTAA
AACTGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAGGAG
TACTCGAGGACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCACCC
TGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAACACATTGTTTT
ACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAACTTCAGGGAGAGTG
AAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAGGCTCAAGCTTT
TACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGGCTCCACTGGTT
TCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAGTTTTAATTAATATG
TTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTCAAT
back to top