FC872116

Overview
NameFC872116
Unique NameFC872116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length839
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.184e-29
Identity = 83/241 (34.44%), Postives = 114/241 (47.30%), Query Frame = 3
Query:   48 DGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR--KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            D ++  +S T A + +  + + ITF N+   PS  +        AVA  +G D SAFY+      QDTL+    R +F  C I G VDFI G+  ++ Q+C I     +   G    +TAQGRT+ N   G V             LV G    YLGR W+ YSR +   S++TD++ P GW EW+       L Y EH   G+G+ TS R KW       SA+  Q     SFI    W+
Sbjct:   95 DHASLAQSPTFATLADNTVVKKITFANSYNFPSNGKINKNPRVPAVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFVFINC---------LVHGFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKWV---KKLSASAVQHLADLSFINRGGWV 323          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.137e-29
Identity = 76/199 (38.19%), Postives = 109/199 (54.77%), Query Frame = 3
Query:   48 DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFG-NAAAVLQNCDIH-ARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLF--YGEHQNSGAGA 632
            D + TF++  V     G    ++   NT G + HQA+AL   AD   +Y C+   YQDTL   +  Q ++N  I G VDFIFG +A A  QN DI     P S     +TA GR+     +  VI KS + A     + +G++  YLGRPW EY+R V  Q+S+T++I+  GW EW  +   NT +  +GE+ N+GAG+
Sbjct:  110 DLTATFRNKAV-----GSQVYNLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDIRVVEGPTSAS---ITANGRSSETDTSYYVINKSTVAAKEGDDVAEGTY--YLGRPWSEYARVVFQQTSMTNVINSLGWTEWSTS-TPNTEYVTFGEYANTGAGS 297          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.217e-28
Identity = 82/247 (33.20%), Postives = 115/247 (46.56%), Query Frame = 3
Query:   48 DGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHAR--KPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFP 755
            D  +  +S T + + +  + + ITF N+   PSK +        AVA  +G D SAFY+      QDTL+    R +F  C I G VDFIFG   ++ Q+C I     +   G    +TAQGRT+P    G +             LV G+   +LGRPW+ YSR +   S++TD++ P GW  W+     N L + EH   G+GA    RVKW       S +  Q     SFI    W+     P
Sbjct:  100 DHYSVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFIFINC---------LVYGTGMAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWNFVGHENQLVFAEHGCFGSGANIGRRVKWV---KKLSESAIQNLADLSFINRGGWVEDLPIP 334          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.042e-28
Identity = 81/257 (31.52%), Postives = 118/257 (45.91%), Query Frame = 3
Query:    3 GGRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARD-------ITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK---NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 743
            G R  TI        D S+TF S    +V       +       +T  N        AVA+ V  D SAFYNCD L  QDT++ +  R  F NC I G +DFIFG+  +V ++C I+A       K     +TAQGR+  +  +G V  +           V GS   YLGR +  +SR + +Q+ ++ ++HP GW+ W       +  Y E +  GAG+  S RV W     + S    Q F+  +FI    W+ +
Sbjct:   44 GQRVTTITYNGHAATDVSSTFTSYPSHIVVRNLSIMNTYNRLTSLTKANGMSWDIKPAVAISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRGS---------VSGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW--IDKLHSFYTKQQFSISNFIDQDQWISN 289          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.114e-27
Identity = 76/232 (32.76%), Postives = 109/232 (46.98%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWD-GNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            T+++A+V V    F AR+I+F NTA     G    QAVA R+  D + F  C     QDTL   + R +F  C I G++DFIFGN  ++ ++C++H+     G    + A GRT P + TG      R         V G+ P Y+GR   +YSR V   +    L+   GW +WD  +    T F+G +   G GA  +  V W           A  F   SF+ G  W+
Sbjct:  141 TYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGS---IAAHGRTCPEEKTGFAFVGCR---------VTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWAR---ALDYESAHPFIAKSFVNGRHWI 357          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.943e-26
Identity = 77/230 (33.48%), Postives = 113/230 (49.13%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTAGP----SKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            T +SAT+ V  E F A  +T +NTA      S+ QA+A+R+ AD +AFY+C    +QDTL       FF +C I GT DFIFG  A++  N  +HA     G + ++TAQGR    +  G      ++  T            YLGR W  + + V   + +T +++P+GW E        T+FYGE++  G G+    RV    +       E   F    +I GS+WL
Sbjct:  140 TVESATLIVWAEYFQAAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHA--VGDGLR-VITAQGRQSATEQNGYTFVHCKVTGTGT--------GIYLGRSWMSHPKVVYAFTEMTSVVNPSGWRENLNRGYDKTVFYGEYKCFGPGSHLEKRVP---YTQDIDKNEVTPFLTLGYIKGSTWL 355          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.665e-25
Identity = 76/250 (30.40%), Postives = 121/250 (48.40%), Query Frame = 3
Query:    6 GRTRTIFTGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG-----PSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK-NMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            G+ +T+   S++ VD      SAT  V    F+A  I+ +N A       S++Q+VA  V AD  AFY+C   +  +TL+ +  R ++  C I G++DFIFG A ++  NC+I        +    +TA  R    + TG V  + +         V G    YLGR    YSR +  ++ ++  + P GW  W  + +   L++GE++  G GA    R  W   + +T   E ++F    FI G+SWL
Sbjct:  102 GKGKTVIESSQSSVDNVA---SATFKVEANHFVAFGISIRNDAPVGMAFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGK---------VYGIDEVYLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDWA--KDLTK-QEVESFLSIDFIDGTSWL 336          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.787e-25
Identity = 74/226 (32.74%), Postives = 114/226 (50.44%), Query Frame = 3
Query:   66 KSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFG-NAAAVLQNCDIHARK-PNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFA-LNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSW 734
            ++AT+    EG    ++   NT G + HQA+A+   A    +Y C    YQDTL   +  Q +    I G VDFIFG +A A    CDI   + P+S     +TA GR+  + ++  VI KS + A     +  G++  YLGRPW +Y+R    ++S+TD+I+  GW EW  +      + + E+ N+G GA        +G R   S+   +  T  S++ GS W
Sbjct:  110 ETATLRNYAEGSAIYNLNIANTCGQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPSSAS---ITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTY--YLGRPWSQYARVCFQKTSMTDVINHLGWTEWSTSTPNTENVTFVEYGNTGTGA--------EGPRANFSSELTEPITI-SWLLGSDW 321          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.165e-25
Identity = 83/264 (31.44%), Postives = 117/264 (44.32%), Query Frame = 3
Query:    3 GGRTRTIFT-GSRNVVDGSTTFKSATVAVVGEGFLARDITFQN------TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARK---PNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQA--FTPGSFIAGSSWLGSTGFPF 758
            GG  +TI   G   + + S TF S    ++  G     ITF+N      ++ P+K    A+ +G D  A  +     +QDTLY    R ++  C+I+G +DFIFG A ++ + C +  R    P +     +TAQGR  P    G V +            V GS    LGR WK YSR +  +S  +D I P GW  W        + + E   +G GA TS RV W     +T A+E     FT  +FI    WL      F
Sbjct:   96 GGIEKTIIAYGDHQLTNTSATFTSYPSNIIITG-----ITFKNKYNIASSSSPTKPAVAAMMLG-DKYAIIDSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFKDCT---------VMGSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPW-----LTKASEKDVLQFTNLTFIDEEGWLSRLPIKF 339          
BLAST of FC872116 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.852e-23
Identity = 71/230 (30.87%), Postives = 105/230 (45.65%), Query Frame = 3
Query:   60 TFKSATVAVVGEGFLARDITFQNTAGPSKH----QAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKLVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 737
            T +SAT+ V    FLA ++   NT+   K     QA+A+R+  D +AFYNC    +QDTL       FF NC I GT DFIFG  A++     +HA     G + ++ A  R    +  G      ++               YLGR W  + + V   + ++ +++P+GW E        T+FYGE+  +G G+  + RV            EA  F    +I GS WL
Sbjct:  140 TVESATLIVWATNFLAANLNIINTSPMPKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA--VGDGLR-VIAAHNRQSTTEQNGYSFVHCKVTGVGT--------GIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRV---AHTQDIDNKEASQFLTLGYIKGSKWL 355          
The following BLAST results are available for this feature:
BLAST of FC872116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PME55_ARATH4.184e-2934.44Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME_ASPAC7.137e-2938.19Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME29_ARATH1.217e-2833.20Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME52_ARATH6.042e-2831.52Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME68_ARATH5.114e-2732.76Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME50_ARATH1.943e-2633.48Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME67_ARATH3.665e-2530.40Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME_ASPTU4.787e-2532.74Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME10_ARATH8.165e-2531.44Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME49_ARATH5.852e-2330.87Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872116 ID=FC872116; Name=FC872116; organism=Citrus clementina; type=EST; length=839bp
GCGGGGGAAGGACTAGAACTATCTTCACAGGAAGTAGAAATGTGGTTGAT
GGAAGCACAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGATT
CTTGGCCCGAGACATTACGTTCCAAAACACAGCAGGCCCCTCAAAGCACC
AGGCAGTGGCACTGCGAGTGGGAGCTGACCTTTCAGCATTTTACAATTGC
GATATGTTAGCTTACCAAGACACACTCTACGTCCACTCGAACCGCCAGTT
CTTTGTGAACTGCTTAATTGCTGGCACGGTTGATTTCATTTTTGGTAATG
CTGCAGCCGTGTTACAAAATTGTGACATCCATGCACGAAAGCCCAATTCC
GGCCAAAAAAATATGGTCACAGCCCAAGGCAGGACTGACCCTAACCAAAA
CACCGGCATTGTCATTCAAAAATCTAGGATTGGTGCCACCTCCGATTTAA
AACTGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGCCCTGGAAGGAG
TACTCGAGGACGGTGATCATGCAGTCGTCGATTACTGACTTGATCCACCC
TGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAACACATTGTTTT
ACGGAGAGCATCAGAACAGCGGAGCCGGTGCCGGAACTTCAGGGAGAGTG
AAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAGGCTCAAGCTTT
TACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGGCTCCACTGGTT
TCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAGTTTTAATTAATATG
TTTTGTATTAGTGGATCCATCGATCTCGGGTCTTTCAAT
back to top