FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH_SULTO (NAD-dependent alcohol dehydrogenase OS=Sulfolobus tokodaii GN=adh PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.171e-14
Identity = 64/229 (27.95%), Postives = 108/229 (47.16%), Query Frame = 2
Query:  122 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDW-------PAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIK-WLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYA-VSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAM-GLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAI 778
            ++D P+P+    K  +VL++++ +GVCH+D+H  +G +           +LP+  GHE AG I  +GD  +   K G  V +  W  +   +C  CR G E  C   +  G + DG + +Y  V + +++  +   L   +AAP+ C+GVT YRA+  +   P +                Q A A+ G  +I +D  ++  +     GAD +V      DP   I+ I
Sbjct:   15 LEDIPIPKP---KGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGRIEEVGDEVVGYSK-GDLVAVNPWEGEG--NCYYCRIGEEHLCDSPRWLGINYDGAYAEYVLVPHYKYLYKL-RRLSAVEAAPLTCSGVTTYRAVRKASLDPSKTLVVIGAGGGLGTMAIQIAKAVSGATIIGVDVREEALEAAKRAGAD-YVINASSQDPVSEIRRI 235          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.530e-14
Identity = 68/224 (30.36%), Postives = 94/224 (41.96%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +P                      A   R+IAIDT   K  L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPDDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.998e-14
Identity = 60/213 (28.17%), Postives = 89/213 (41.78%), Query Frame = 2
Query:  152 DLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC-------SQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQ-AAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTG--DDKRKLCASYGADKFVDFEDHSDPE 760
            D+   +V + V Y G+CHTDLH  K D+      P V GHE  G +  +G   +   KVG  VG+ +  +SC  C+NC + +E  C             G +  G +    V     VT IP+GLPL+   +  LC G +          +PG +               ++A   GL++  I T     K +   + GAD F+   D    E
Sbjct:   35 DIGEEDVALEVLYCGICHTDLHMAKNDF-GNSIYPYVPGHEVIGIVAEVGS-KVEKYKVGDKVGVGYFVESCRSCQNCIDNLENYCPKHILTQGDKHIDGTTTYGGYSDSMVVDEHFVTRIPEGLPLDGCGSSSLCWGYSHSPLKYYGLDKPGLH-VGVVGLGGLGHMVAKFAKTHGLKITVISTSPPTKKEEAIKNLGADSFLVSRDPDQME 244          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: YGD6_SCHPO (Zinc-type alcohol dehydrogenase-like protein C1773.06c OS=Schizosaccharomyces pombe GN=SPBC1773.06c PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 64/223 (28.70%), Postives = 100/223 (44.84%), Query Frame = 2
Query:   89 VFKDHNANIDFVK--DHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSK---ARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFE 742
            V  D  +  D +K  ++ VPQ+  L PGEVLV++  + + + DL   KG +P   +LP+V G +GAG I  +G+  +   + G +V        C    N  +G     +     G + DG FQ+YAV  A  +   P  L  E+ A + CA VT +  L  SK    +PG                 Q+A A G  V    + D+K +     GA   ++++
Sbjct:    6 VVHDEISGFDQLKPEEYEVPQK--LNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGE-DVEGFEKGDSV-------VCNFFTNYLDGTPTDFATHSALGGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGN-NVLVLGTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTINYK 217          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_PYRKO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus kodakaraensis GN=tdh PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 64/211 (30.33%), Postives = 97/211 (45.97%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVD-FEDHSDPEKFIKAIKD 784
            PGEVL++V  + +C TDLH ++ +  A+ R+  P + GHE AG +V +G G + +L+VG  + ++     C  C  C+      C   +  G  +DG F  YA+  A++    P  +P E AA     G  V   L    A  G+                   A+    VI  +  + +RKL    GAD  V+ FE+  DP KF+  I D
Sbjct:   29 PGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPG-VEDLQVGDYISVETHI-VCGKCYACKHNRYHVCQNTKIFGVDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPIA--GRSTLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGADYVVNPFEE--DPVKFVMDITD 233          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.813e-14
Identity = 61/212 (28.77%), Postives = 93/212 (43.87%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ---AQCSGYSVDGT------------------FQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGL-RVIAIDTGDDKRKLCASYGADKFVD 736
            EV V+V+++GVCHTD +   G   A+   P+V GHEGAG + ++G+G + ++KVG +V + +  + C +C+ C  G    C +    Q  G   DGT                  F QY V     V  + D  P ++   + C   T Y A +N+                      Q A + G   +I ID  D K+     +GA KFV+
Sbjct:   36 EVRVKVEFTGVCHTDAYTLSGA-DAEGSFPVVFGHEGAGVVESVGEG-VESVKVGDSVVLLYTPE-CRECKFCLSGKTNLCGKIRATQGKGLLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISKGDKIGVFGAGCIGLSVIQGAVSKGASEIIVIDINDSKKAWADQFGATKFVN 244          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_STRMK (L-threonine 3-dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14
Identity = 62/213 (29.11%), Postives = 95/213 (44.60%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHS 751
            ++++ PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G + A+G   +T  ++GQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA     G   + AL  +                      ++  A    V+  D  D + KL A  GA + V+  + S
Sbjct:   14 WLEEVPVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTIKPGLTIGHEFVGRVAALGSA-VTGYEIGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAAFFDPYGNAAHCALEFNVIGEDVLITGAGPIGIIAAGICKHIGAR--NVVVTDVNDFRLKLAADMGATRVVNVANQS 219          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14
Identity = 64/222 (28.83%), Postives = 93/222 (41.89%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVD------------------GTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            K GEVLV++ ++GVCHTD +   GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +C+ C  G    C    + Q  G   D                   TF +Y V     +  I      EQ   + C   T   A+ N +K + G                     A   R+ AIDT   K +L   +GA   ++  D+  P
Sbjct:   26 KKGEVLVKISHTGVCHTDAYTLSGDDP-EGLFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECDFCTSGKTNLCVAVRETQGKGVMPDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGGIGLAVVQGARQAKAGRIFAIDTNPSKFELAKQFGATDCINPNDYDKP 244          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14
Identity = 62/228 (27.19%), Postives = 101/228 (44.30%), Query Frame = 2
Query:  143 QQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            Q A  + GEV V++ ++ +CHTD + W G  P +   P + GHE AG + ++G+G +T+++ G +V I      C +C+ C+ G    C + +             S +SV+G          TF QY V +   V  I    PL++   + C   T   A+ N +K   G                    AA   RVI ID  + K  +  ++G  +FV+ ++H  P
Sbjct:   30 QVAPPQAGEVRVKILFTALCHTDHYTWSGKDP-EGLFPCILGHEAAGIVESVGEG-VTDVQPGDHV-IPCYQAECKECKFCKSGKTNLCGKVRSATGVGVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTEFVNPKEHDKP 254          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.915e-14
Identity = 69/228 (30.26%), Postives = 95/228 (41.67%), Query Frame = 2
Query:  140 PQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            PQQ     GEVLV++ ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++++G +V I      C  C  CR G    C      Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K +L    GA   ++ +DH  P
Sbjct:   25 PQQ-----GEVLVKITHTGVCHTDAFTLSGDDP-EGLFPVVLGHEGAGIVVEVGEG-VTSVQLGDHV-IPLYTAECGKCLFCRSGKTNLCVAVRATQGKGVMPDGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGGIGLAVVQGARQAKAGRIIAIDTNPAKFELAKQMGATDCINPKDHDQP 244          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
ADH_SULTO1.171e-1427.95NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
FRMA_ECOSM1.530e-1430.36S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
MTDH3_STYHU1.998e-1428.17Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
YGD6_SCHPO5.813e-1428.70Zinc-type alcohol dehydrogenase-like protein C1773... [more]
TDH_PYRKO5.813e-1430.33Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
FADH_PICPA5.813e-1428.77S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
TDH_STRMK7.591e-1429.11L-threonine 3-dehydrogenase OS=Stenotrophomonas ma... [more]
FRMA_PASPI7.591e-1428.83S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADHX_MAIZE7.591e-1427.19Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
FRMA_SYNY39.915e-1430.26S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
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