FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_PROMH (L-threonine 3-dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 51/153 (33.33%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLAD---SCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            ++ D PVP+   L   +V++++  + +C TD+H +  D W  K   +P+V GHE  G IVAIG         G N+G +   +   +C  C NCR G    C      G +  G F +Y V  A +   IPD +P E AA     G  V+ AL
Sbjct:   14 WMTDVPVPE---LGHNDVMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYIGEIVAIGQEVK-----GFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRPGCFAEYLVIPAFNAFKIPDNIPDELAAIFDPFGNAVHTAL 158          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_LEGPL (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Lens) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLP--LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            +++D PVP+       +VL+++  + +C TD+H +  D  A+  +P  +  GHE  G IV +G   +  LKVGQ V  +    +C  C NCR G    C      G +  G F +Y    A +V  +PD +  EQAA
Sbjct:   14 WMQDIPVPEYG---VNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGK-EVQGLKVGQRVSGEGHI-TCGFCRNCRAGKRHLCRNTLGVGVNRPGCFAEYLALPATNVIALPDNITEEQAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_LEGPH (L-threonine 3-dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tdh PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLP--LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            +++D PVP+       +VL+++  + +C TD+H +  D  A+  +P  +  GHE  G IV +G   +  LKVGQ V  +    +C  C NCR G    C      G +  G F +Y    A +V  +PD +  EQAA
Sbjct:   14 WMQDIPVPEYG---VNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGK-EVQGLKVGQRVSGEGHI-TCGFCRNCRAGKRHLCRNTLGVGVNRPGCFAEYLALPATNVIALPDNITEEQAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_LEGPC (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Corby) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLP--LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            +++D PVP+       +VL+++  + +C TD+H +  D  A+  +P  +  GHE  G IV +G   +  LKVGQ V  +    +C  C NCR G    C      G +  G F +Y    A +V  +PD +  EQAA
Sbjct:   14 WMQDVPVPEYG---VNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGK-EVQGLKVGQRVSGEGHI-TCGFCRNCRAGKRHLCRNTLGVGVNRPGCFAEYLALPATNVIALPDNITEEQAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_LEGPA (L-threonine 3-dehydrogenase OS=Legionella pneumophila (strain Paris) GN=tdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  119 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLP--LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 523
            +++D PVP+       +VL+++  + +C TD+H +  D  A+  +P  +  GHE  G IV +G   +  LKVGQ V  +    +C  C NCR G    C      G +  G F +Y    A +V  +PD +  EQAA
Sbjct:   14 WMQDIPVPEYG---VNDVLIKIKRTAICGTDIHIYSWDEWAQATIPVPMTVGHEFYGEIVEVGK-EVQGLKVGQRVSGEGHI-TCGFCRNCRAGKRHLCRNTLGVGVNRPGCFAEYLALPATNVIALPDNITEEQAA 145          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 57/216 (26.39%), Postives = 85/216 (39.35%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCS---QAQCSGYSVDG-------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVD 736
            K GEV+V +  +G+CHTD     G  P +   P + GHEGAG +V +G G +T++K G +V I      C  C +C  G    C+     Q  G   DG                   TF  Y V     V  + +  P ++   I C   T   A++N +K   G                     A    +I +D  DDK+ +   +G   F++
Sbjct:   26 KAGEVMVEIKATGICHTDEFTLSGADP-EGLFPSILGHEGAGVVVEVGPG-VTSVKPGNHV-IPLYTPECRQCASCLSGKTNLCTAIRATQGQGLMPDGTSRFSMLDGTPIFHYMGCSTFSNYTVLPEIAVAKVREDAPFDKICYIGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVLQGLRLAGADMIIGVDLNDDKKPMAEHFGMTHFIN 238          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 54/229 (23.58%), Postives = 95/229 (41.48%), Query Frame = 2
Query:  140 PQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            P QA+    EV +++ ++ +CHTD++ W+      P  P + GHE  G + ++G+G +T+LK G +V +      C DC +C+      C   +             S +S+ G          TF +Y V +   +  I    PL++   + C   T   A LN +K + G                     +   R+I +D   D+ +    +G  +FV+ + H  P
Sbjct:   32 PPQAN----EVRIKILFTSLCHTDVYFWEAK-GQNPLFPRIYGHEAGGIVESVGEG-VTDLKAGDHV-LPVFTGECKDCAHCKSEESNMCDLLRINTDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKKFGVTEFVNPKAHEKP 253          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 61/222 (27.48%), Postives = 86/222 (38.74%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC----------------SQAQCSGYSV-----DGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 757
            K  EV V++  + VCHTD +   G  P +   P++ GHEGAG + ++G+G +T  K G  V I      C +C+ C       C                S+  C G  V       TF +Y V     +T I    PL++   + C   T Y A LN +K  PG                     A   R+I ID   DK      +GA + +   D   P
Sbjct:   30 KAHEVRVKIIATAVCHTDAYTLSGADP-EGSFPVILGHEGAGIVESVGEG-VTKFKPGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGVMPDGTSRFTCKGKQVLHFMGTSTFSEYTVVADISLTKINASAPLDKVCLLGCGVSTGYGAALNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDLNKDKFAKAKEFGATECISPADFKKP 248          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 61/229 (26.64%), Postives = 93/229 (40.61%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ---AQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAIKDM 787
            EV +++  + VCHTD +   G  P +   P++ GHEGAG + ++G+G +T LK G  V I      C +C+ C       C +    Q  G   DG                  TF +Y V     V  I    PL++   + C   T Y A +N +K  PG                     A   R+I ID   DK      +GA + +      +P+ F K+I+++
Sbjct:   34 EVRIKIIATAVCHTDAYTLSGADP-EGCFPVILGHEGAGIVESVGEG-VTKLKAGDTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMGCKVAGASRIIGIDINKDKFAKAKEFGATECI------NPQDFSKSIQEV 253          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
TDH_PROMH7.856e-1133.33L-threonine 3-dehydrogenase OS=Proteus mirabilis (... [more]
TDH_LEGPL7.856e-1132.85L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_LEGPH7.856e-1132.85L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_LEGPC7.856e-1132.85L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
TDH_LEGPA7.856e-1132.85L-threonine 3-dehydrogenase OS=Legionella pneumoph... [more]
FADH_PARDE7.856e-1126.39S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADH_MALDO7.856e-1123.58Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADHX_UROHA7.856e-1127.48Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADHX_RAT7.856e-1126.64Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
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