FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.620e-26
Identity = 72/206 (34.95%), Postives = 102/206 (49.51%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQA--QCSGYSVDGT-----FQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCAS-YGADKFVDFEDHSDPE 760
            +V +R+ + GVC+ D+ AW  +       PLV GHE AG +  +G   + + KVG +VG+    +SC DCENC   +E  CSQ     +G   DGT     +  + V + R+   IPDG PLE+AAP+LCAG+TVY  ++                        ++  A GL+V  I T + KRK      GAD FV   D +  E
Sbjct:   36 DVSLRITHCGVCYADV-AWTRNILNNSMYPLVPGHEIAGVVTEVG-ADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVISTSESKRKEAIDLLGADNFVVSSDENQME 239          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.620e-26
Identity = 74/208 (35.58%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ--AQCSGYSVD--------GTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL-LNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFED 745
            K  +V ++V Y G+CHTDLH  K DW      P+V GHE  G +  +G G +T  K G  VG+ +   SC  CE C  G E  C++    C+G   D        G F    V    +V  +P GLPL+ AAP+LCAGVTVY  + ++    PG++               ++A A G+RV  I T   KR+    + GAD+F+   D
Sbjct:  106 KDDDVTIKVLYCGICHTDLHIVKNDW-GNAMYPVVPGHEIVGVVTGVGAG-VTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKH-VGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKRQEALEHLGADEFLVSRD 310          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.129e-25
Identity = 71/205 (34.63%), Postives = 102/205 (49.76%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC-------SQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL-LNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFED 745
            K  +V ++V Y G+CHTDLH  K DW      P+V GHE  G +  +G G +T  K G  VG+ +   SC  C++C +G E  C       +     G +  G F    V    +V  +P GLPL+ AAP+LCAGVTVY  + ++    PG++               ++A A G+RV  I T   KR+    + GAD+F+   D
Sbjct:  106 KDDDVTIKVLYCGICHTDLHVVKNDW-GNAMYPVVPGHEIVGVVTGVGAG-VTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKH-VGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKRREALEHLGADEFLVSRD 307          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.559e-25
Identity = 71/215 (33.02%), Postives = 104/215 (48.37%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL-LNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFVDFEDHSDPEKFIKAIKDM 787
            +V V++ Y GVCH+DLH  K DW      P+V GHE  G +  +G   +   +VG NVG+  + +SC  CENC + +E  C +      +   G    G +  + V + R+V   PD LPL+  AP+LCAG+TVY  +       PG++               ++  A GL+V  I T  +K  +     GAD F+      DPEK   A+  M
Sbjct:   39 DVSVKILYCGVCHSDLHTLKNDW-GFTTYPVVPGHEIVGVVTKVGIN-VKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNSPYKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKH-LGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFL---VSKDPEKMKAAMGTM 247          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.781e-24
Identity = 71/215 (33.02%), Postives = 104/215 (48.37%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL-LNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCAS-YGADKFVDFEDHSDPEKFIKAIKDM 787
            +V +++ Y GVCH+DLH  K DW      P+V GHE AG +  +G   +T  K G  VG+  + DSC +CE C++ +E+ C +      +   G    G +  + V + R V   PD LPL+  AP+LCAG+TVY  +       PG++               ++  A GL+V  I +  +K        GAD F+     SDPEK   A   M
Sbjct:   32 DVTLKILYCGVCHSDLHTVKNDW-GFTTYPVVPGHEIAGIVTKVGSN-VTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNSPYKGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKH-LGVAGLGGLGHVAIKFGKAFGLKVTVISSSPNKESEAIDVLGADSFL---LSSDPEKMKAATGTM 240          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 71/212 (33.49%), Postives = 101/212 (47.64%), Query Frame = 2
Query:  152 DLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFEDHSDPEK 763
            D  P +V ++V   GVCHTD+H  K D       P+V GHE  G +V +G   +T  KVG  VG+  +  SC +C  C+  IE  C++   S       G    G F +  V + + V  IPDG+  EQAAP+LCAG+TVY  L +   +                   + A AMG  V  I + D KR+    + GAD+++   D    +K
Sbjct:   31 DTGPEDVFIKVISCGVCHTDIHQIKNDL-GMSHYPMVPGHEVVGEVVEVGSD-VTRFKVGDVVGVGVIVGSCKNCHPCKSEIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVHQKFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEAMEHLGADEYLVSSDVESMQK 240          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: YJGB_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjgB OS=Escherichia coli (strain K12) GN=yjgB PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.803e-23
Identity = 68/203 (33.50%), Postives = 99/203 (48.77%), Query Frame = 2
Query:  152 DLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTN-LKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALL----NSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFED 745
            +L+P +V V+VDY G+CH+DL     +W    + PLV GHE  G +VA+G       L+VGQ VGI W A SC  C+ C  G +  C Q         G F +   +  + V P+P+ + +E A P+LC G+TV++ LL     + +R G                 +   AMG  V A  +   K +   + GADK V+  D
Sbjct:   25 ELRPQDVEVQVDYCGICHSDLSMIDNEWGFS-QYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVG-----VIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRD 221          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH6_YEAST (NADP-dependent alcohol dehydrogenase 6 OS=Saccharomyces cerevisiae GN=ADH6 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.354e-23
Identity = 67/218 (30.73%), Postives = 101/218 (46.33%), Query Frame = 2
Query:  131 HPVPQQADLKP---GEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC-------SQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSD 754
            +P   + D KP    ++ ++++  GVC +D+H   G W    ++PLV GHE  G +V +G  + + LKVGQ VG+     SCL+C+ C+   E  C       SQ    GY   G +  Y   +   V PIP+ +P   AAP+LC G+TVY  L+ +   PG+                  + AMG     I     KR+     GAD ++   +  D
Sbjct:   20 NPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHW-GNMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCGPGK-KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGD 235          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.075e-23
Identity = 71/216 (32.87%), Postives = 106/216 (49.07%), Query Frame = 2
Query:  143 QQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGY-SVD-------GTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKF 766
            ++  L+P +VL+ + +SG+CH+D+H+   +W      P+V GHE AG + A+G   +T L VG  VG+    DSC +CE C    E  C++     Y SVD       G + Q  V   R V  IPD L ++ A+P+LCAG+T Y  L +    PG+                Q+A AMG  V  +    +K++     GA+ +      SDP  F
Sbjct:   25 ERRGLRPHDVLIDIKFSGICHSDIHSAFDEWGGGI-FPMVPGHEIAGVVTAVGT-KVTKLAVGDRVGVGCFVDSCGECEYCLNAEEQFCTKGVVQTYNSVDYDGNPTYGGYSQKIVVTDRFVVRIPDRLEMDVASPLLCAGITTYSPLKHWNVGPGK-KVAIVGVGGLGHLAIQFAHAMGAEVTVLSRSMNKKEEALELGANHYF---ATSDPATF 234          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.850e-23
Identity = 65/198 (32.83%), Postives = 98/198 (49.49%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVD-------GTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL-LNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTG-DDKRKLCASYGADKFV 733
            +V +++ + G+CH+DLH  K +W      PLV GHE AG +  +G   +T  K G  VG+  + +SC  CE+C  G E  C +   +  SVD       G +    V + R V   P+ +PL+  AP+LCAG+TVY  +  +    PG++               ++A A GL+V  I +    KR+     GAD FV
Sbjct:   42 DVAIKILFCGICHSDLHCIKNEWKHSI-YPLVPGHEIAGVVTEVGKN-VTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKH-VGVLGLGGLGHVAVKFARAFGLKVTVISSSPGKKREALERLGADAFV 236          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
CADH1_ORYSJ6.620e-2634.95Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CAD8C_ORYSJ6.620e-2635.58Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8B_ORYSJ1.129e-2534.63Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
MTDH_MEDSA9.559e-2533.02Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH1_STYHU2.781e-2433.02Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH_POPDE1.380e-2333.49Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
YJGB_ECOLI1.803e-2333.50Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADH6_YEAST2.354e-2330.73NADP-dependent alcohol dehydrogenase 6 OS=Saccharo... [more]
ADHA_BACSU3.075e-2332.87Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
CADH3_ORYSJ6.850e-2332.83Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
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