FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.947e-23
Identity = 69/202 (34.16%), Postives = 101/202 (50.00%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQA-QCSGYS------VDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL-LNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFVDFED 745
            +V  +V + G+CH+DLH  K +W      PLV GHE  G +  +G   +T  K G+ VG+  L  SC  C++C EG+E  C ++ Q  G+         G +  + V     V  IPD LPL+ AAP+LCAG+TVY  +  +   +PG +               ++A AMG +V  I T + KR +     GAD F+   D
Sbjct:   35 DVRFKVLFCGICHSDLHMVKNEW-GMSTYPLVPGHEIVGVVTEVG-AKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMH-IGVVGLGGLGHVGVKFAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRD 233          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.947e-23
Identity = 70/215 (32.56%), Postives = 99/215 (46.05%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS---KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDK-RKLCASYGADKFVDFEDHSDPEKFIKAI 778
            +V ++V Y G+CHTDLH    DW      P+V GHE  G +  +G   +   KVG  VG+  +A SCLDCE+CR   E  C +   +       G    G +    V++ R V  IPD LPL+ AAP+LCAG+TVY  +      +A                    ++  A GL V  I T   K R+   +  AD FV   D    +   +++
Sbjct:   37 DVTIKVKYCGMCHTDLHFIHNDWGIT-MYPVVPGHEITGVVTKVGTN-VAGFKVGDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIFWDGSITYGGYSGMLVAHKRFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVAVKFGKAFGLHVTVISTSPAKEREARENLKADNFVVSTDQKQMQAMTRSL 249          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHA_MYCTU (Probable alcohol dehydrogenase adhA OS=Mycobacterium tuberculosis GN=adhA PE=3 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.168e-22
Identity = 69/207 (33.33%), Postives = 95/207 (45.89%), Query Frame = 2
Query:  137 VPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIV----AIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFED 745
            VP+ A   P E+LV V   GVC TDLH  +GD P   R  ++ GHE  G ++    A+G         G  VGI WL  +C  C+ CR G E  C Q++ +G+  DG + ++    A     +P G    + AP+LCAG+  YR+LL ++  PG                 Q A A G  +  +  G   RKL    GA    D  D
Sbjct:   33 VPRPA---PSELLVAVHACGVCRTDLHVTEGDLPVH-RERVIPGHEVVGEVIEVGSAVGAAAGGEFDRGDRVGIAWLRHTCGVCKYCRRGSENLCPQSRYTGWDADGGYAEFTTVPAAFAHHLPSGYSDSELAPLLCAGIIGYRSLLRTELPPGG-RLGLYGFGGSAHITAQVALAQGAEIHVMTRGARARKLALQLGAASAQDAAD 234          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.603e-22
Identity = 73/213 (34.27%), Postives = 100/213 (46.95%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEA-------TCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFEDHSDPEKFIKA 775
            P +V V+V Y G+CHTDLH  K D       PLV GHE  G +V +G   ++  KVG  VG+  L  SC +C  C+  IE         C+     G    G F +  V   + V  IP+G+  EQAAP+LCAG+TVY  L +   +                   + A AMG  V  I + + KR+    + GAD   D+   SD +K  +A
Sbjct:   34 PEDVEVKVLYCGLCHTDLHQVKNDL-GMSNYPLVPGHEVVGEVVEVGPD-VSKFKVGDTVGVGLLVGSCRNCGPCKRDIEQYCNKKIWNCNDVYTDGKPTQGGFAKSMVVDQKFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGAD---DYLVSSDTDKMQEA 241          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.603e-22
Identity = 65/202 (32.18%), Postives = 96/202 (47.52%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC-------SQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKAR-PGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFVDFED 745
            +V ++V Y G+CHTDLH  K +W      P+V GHE  G +  +G G +T  K G  VG+ +  DSC  C++C +G E  C       +     G +  G F    V    +V  +P  LP + AAP+LCAGVTVY  ++      PG++               ++  A G++V  I +   KR +     GAD F+   D
Sbjct:   34 DVTIKVLYCGICHTDLHIIKNEW-GNAMYPVVPGHEIVGVVTGVGAG-VTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKH-LGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKRGEALGRLGADAFLSSRD 232          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.400e-22
Identity = 62/197 (31.47%), Postives = 95/197 (48.22%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVD-------GTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFV 733
            +V++++ Y G+CH+DLH+ K +W      PLV GHE AG +   G   +T  K G  VG+  + +SC  C++C +G+E  C     +  SVD       G +    V + R V   P+ +PL++ AP+LCAG+TVY  +                         ++A A G+ V  I +   KR +     GAD FV
Sbjct:   32 DVVIKILYCGICHSDLHSIKNEWK-NATYPLVPGHEIAGVVTEAGKN-VTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVISSSPGKRQEALERLGADAFV 226          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.799e-22
Identity = 71/217 (32.72%), Postives = 106/217 (48.85%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS---------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQ---AAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKA 775
            P +V + + Y GVCH+DLH  + +W A    P V GHE  G +VA+GD  +     G  VG+  + DSC  CE C +G+E  C     +         G+++ G  QQ  V + R+V  I    P EQ    AP+LCAG+T Y  L + +A PG+                + A AMG  V+A  T + KR+   + GAD+ V+  +  +    +K+
Sbjct:   27 PNDVKIEIAYCGVCHSDLHQVRSEW-AGTVYPCVPGHEIVGRVVAVGD-QVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVV-HERYVLRIRH--PQEQLAAVAPLLCAGITTYSPLRHWQAGPGK-KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKS 237          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.799e-22
Identity = 63/201 (31.34%), Postives = 92/201 (45.77%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC-------SQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFVDFED 745
            +V ++V Y G+CHTDLH  K +W      P+V GHE  G +  +G G +T  K G  VG+ +  DSC  C++C +G E  C       +     G +  G F    V    +V  +P  LP + AAP+LCAGVTVY  ++                        ++  A G++V  I +   KR +     GAD F+   D
Sbjct:   34 DVTIKVLYCGICHTDLHTIKNEW-GNAMYPVVPGHEIVGVVAGVGAG-VTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKREEALERLGADAFLSSRD 232          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  152 DLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYS--------VDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            D  P +V + + ++G+CH+D+H  K +W  +P  P+V GHE AG + A+G   +T  + G  VG+    DSC +C +C  GIE  C       Y+          G + +  V    +V  IPD LPL+ AAP+LCAG+T+Y  L
Sbjct:   25 DPGPHDVAIDIKFAGICHSDIHTVKAEW-GQPNYPVVPGHEIAGVVTAVGS-EVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPL 167          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  152 DLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYS--------VDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 562
            D  P +V + + ++G+CH+D+H  K +W  +P  P+V GHE AG + A+G   +T  + G  VG+    DSC +C +C  GIE  C       Y+          G + +  V    +V  IPD LPL+ AAP+LCAG+T+Y  L
Sbjct:   25 DPGPHDVAIDIKFAGICHSDIHTVKAEW-GQPNYPVVPGHEIAGVVTAVGS-EVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPL 167          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
CADH8_ARATH8.947e-2334.16Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH6_ORYSJ8.947e-2332.56Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
ADHA_MYCTU1.168e-2233.33Probable alcohol dehydrogenase adhA OS=Mycobacteri... [more]
CADH1_TOBAC2.603e-2234.27Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CAD8D_ORYSJ2.603e-2232.18Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CADH5_ORYSJ3.400e-2231.47Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
YAHK_ECOLI5.799e-2232.72Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
CAD8A_ORYSJ5.799e-2231.34Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
ADHC_MYCTU7.574e-2236.55NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO7.574e-2236.55NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
back to top