FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.579e-19
Identity = 66/206 (32.04%), Postives = 91/206 (44.17%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGY-SVD-------GTFQQYAVSYARHVTPIPD--------GLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFV 733
            +V ++V Y G+CH+DLH  K +W      P+V GHE  G +  +G   +   K G  VG+  + ++C  CE+CR+G E  CS      Y SVD       G +    V   R V   P          LPL+  AP+LCAGVTVY  +                         ++A A G+RV  I T   KR +     GAD F+
Sbjct:   49 DVAIKVLYCGICHSDLHTIKNEW-RNAVYPVVAGHEITGVVTEVGKN-VARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFI 252          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.063e-19
Identity = 66/203 (32.51%), Postives = 93/203 (45.81%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFVDFEDHS 751
            +V+++V Y G+CHTDLH  K    A  + P+V GHE  G +V +G   ++   VG  VG+  +   C DC  C+  +E  C++   S       G    G F    V   + V  IP GL  EQAAP+LCAGVTVY  L +                       + A +MG  V  I + D KR +     GAD ++   D +
Sbjct:   37 DVVLKVLYCGICHTDLHQTKNHLGAS-KYPMVPGHEVVGEVVEVGP-EVSKYSVGDVVGVGVIVGCCRDCRPCKANVEQYCNKKIWSYNDVYTDGKPTQGGFAGSMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLMTPGLRGGILGLGGVGHMGVKVAKSMGHHVTVISSSDKKRAEAMDDLGADDYLVSSDEA 237          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.063e-19
Identity = 68/217 (31.34%), Postives = 98/217 (45.16%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQA--QCSGYSVDGT------FQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL-LNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDK-RKLCASYGADKFVDFEDHSDPEKFIKAIKDM 787
            +V V++ + GVCH+DLH  K  W    R P++ GHE  G    +G   +T  K G  VG+  +  SC  CE+C + +E  C +     +  S DGT      +    V   R V  IPDGLP +  AP+LCAG+TVY  +      +                   +   A GLRV  I    +K R+     GAD F+     +D +K  +A+  M
Sbjct:   33 DVTVKILFCGVCHSDLHTIKNHWGFS-RYPIIPGHEIVGIATKVGKN-VTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFL---VTTDSQKMKEAVGTM 244          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.694e-19
Identity = 67/203 (33.00%), Postives = 92/203 (45.32%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFED 745
            P +V+V+V Y G+CHTD+H  K    A  + P+V GHE  G +V +G   +T   VG  VG+  +   C +C+ C+  +E  C++   S       G    G F    V   + V  IP GL  EQAAP+LCAGVTVY  L                         + A AMG  V  I +   KR     + GAD ++   D
Sbjct:   34 PEDVVVKVLYCGICHTDIHQAKNHLGAS-KYPMVPGHEVVGEVVEVGP-EVTKYGVGDVVGVGVIVGCCRECKPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVMKIPAGLAPEQAAPLLCAGVTVYSPLKAFGLTTPGLRGAILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSD 234          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: ADH_SULAC (NAD-dependent alcohol dehydrogenase OS=Sulfolobus acidocaldarius GN=adh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.518e-19
Identity = 69/208 (33.17%), Postives = 100/208 (48.08%), Query Frame = 2
Query:  164 GEVLVRVDYSGVCHTDLHAWKGD-----WPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGI-KWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYA-VSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAM-GLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            G+VLV+VDY+GVCHTDL    G        +KP LPLV GHE AG +V +G G +   K    V I  W+ D    C  C+ G +  C   +  G +V+G + +Y  V   R++  + + L    A+P+ C+GVT YRAL  +   P +                Q A A+ G  +I +D  ++  KL  + GAD      D  +  K
Sbjct:   26 GQVLVKVDYAGVCHTDLSVRSGAIFNRISSSKPTLPLVIGHEIAGEVVELG-GNVEGFKKSDKVLIDPWIGDG--SCHYCKIGEDQYCDNPKWLGINVNGGYGEYVLVPDYRYMFKLRN-LSTSTASPLACSGVTAYRALRLANLDPSKSVMIIGAGGGLGSIAVQIAKAIHGSFIIGVDVSEEGLKLATNLGADYVTSKVDEEEVRK 229          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.595e-19
Identity = 64/205 (31.22%), Postives = 89/205 (43.41%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFEDHS 751
            P ++ ++V   GVCH+D+H  K D       P+V GHE  G ++ +G   +T  +VG  VG   +   C  C  C    E  C++           G    G F    V   R V  IPDGL  EQAAP++CAGVTVY  L+    +                   + A AMG  V  I + D KR     + GAD ++   D +
Sbjct:   34 PEDLYIKVLSCGVCHSDIHQIKNDL-GMSHYPMVPGHEVVGEVLEVGS-EVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDEN 236          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.001e-19
Identity = 66/203 (32.51%), Postives = 91/203 (44.83%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFED 745
            P +V+V+V Y G+CHTD+H  K    A  + P+V GHE  G +V +G   +    VG  VG+  +   C +C  C+  +E  C++   S       G    G F    V   + V  IP GL  EQAAP+LCAGVTVY  L +                       + A AMG  V  I +   KR     + GAD ++   D
Sbjct:   34 PEDVVVKVLYCGICHTDIHQAKNHLGAS-KYPMVPGHEVVGEVVEVGP-EVAKYGVGDVVGVGVIVGCCRECSPCKANVEQYCNKKIWSYNDVYTDGRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSD 234          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.001e-19
Identity = 63/205 (30.73%), Postives = 89/205 (43.41%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFEDHS 751
            P ++ ++V   G+CH+D+H  K D       P+V GHE  G ++ +G   +T  +VG  VG   +   C  C  C    E  C++           G    G F    V   R V  IPDGL  EQAAP++CAGVTVY  L+    +                   + A AMG  V  I + D KR     + GAD ++   D +
Sbjct:   34 PEDLYIKVLSCGICHSDIHQIKNDL-GMSHYPMVPGHEVVGEVLEVGS-EVTKYRVGDRVGTGIVVGCCRSCSPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGERFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDEN 236          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.024e-18
Identity = 61/212 (28.77%), Postives = 97/212 (45.75%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFEDHSDPEKFIKAI 778
            +V ++V   G+CHTD+H  K D       P+V GHE  G ++ +G   ++   VG  VG+  +   C  C+ C   +E  C++   S       G    G F    +   + V  IP+G+ +EQAAP+LCAGVTVY  L +                       + A AMG  V  I + D K++    + GAD +V   D ++ ++   ++
Sbjct:   37 DVYIKVICCGICHTDIHQIKNDL-GMSNYPMVPGHEVVGEVLEVGSD-VSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYNDVYTDGKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGLKGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSSDPAEMQRLADSL 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.337e-18
Identity = 61/197 (30.96%), Postives = 89/197 (45.18%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSV--DGT-----FQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCAS-YGADKFV 733
            +V  +V Y G+CH+DLH  K +W      P + GHE  G +  +G+  + N KVG  VG+  +  SC  CE+C   +E  C +   +  S   DGT     +    V        IPD + L+  AP+LCAGVTVY  L + +                     ++  A G +V  I T  +K+    +  GAD FV
Sbjct:   40 DVTFKVLYCGICHSDLHYIKNEW-GNAVYPAIPGHEIVGVVTEVGN-KVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTSPNKKDEAVNRLGADSFV 234          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
CADH7_ORYSJ1.579e-1932.04Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH_LOLPR2.063e-1932.51Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CADH2_ARATH2.063e-1931.34Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH_SACOF2.694e-1933.00Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
ADH_SULAC3.518e-1933.17NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
CADH2_EUCGU4.595e-1931.22Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH_MAIZE6.001e-1932.51Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH_EUCGL6.001e-1930.73Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH4_ARATH1.024e-1828.77Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
MTDH_MESCR1.337e-1830.96Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
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