FC872123

Overview
NameFC872123
Unique NameFC872123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.978e-18
Identity = 64/203 (31.53%), Postives = 91/203 (44.83%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCS-------GYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKR-KLCASYGADKFVDFED 745
            P +V+V+V Y G+CHTD+H  K    A  + P+V GHE  G +V +G   +T    G  VG+  +   C +C  C+  +E  C++   S       G    G F    V   + V  IP GL  EQAAP+LCAG+TVY  L +                       + A +MG  V  I +   KR +     GAD ++   D
Sbjct:   34 PEDVVVKVLYCGICHTDIHQAKNHLGAS-KYPMVPGHEVVGEVVEVGP-EVTKYSAGDVVGVGVIVGCCRECHPCKANVEQYCNKRIWSYNDVYTDGRPTQGGFASAMVVDQKFVVKIPAGLAPEQAAPLLCAGLTVYSPLKHFGLMSPGLRGGVLGLGGVGHMGVKVAKSMGHHVTVISSSARKRGEAMDDLGADAYLVSSD 234          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.293e-17
Identity = 62/198 (31.31%), Postives = 87/198 (43.94%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQA-------QCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL-LNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRK-LCASYGADKFV 733
            +V ++V + GVCH+D H    +W      P+V GHE  G +  +G   +  +KVG NVGI  L  SC  CE+C +  E+ C             G    G +    V+    +   P  LPL+  AP+LCAG+T Y  L      +PG                 + A A G +V  ID  + KRK      GAD F+
Sbjct:   39 DVRLKVLFCGVCHSDHHMIHNNW-GFTTYPIVPGHEIVGVVTEVGS-KVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENTIDTYGSIYFDGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGT-KIGVVGLGGLGHVAVKMAKAFGAQVTVIDISESKRKEALEKLGADSFL 233          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.293e-17
Identity = 60/212 (28.30%), Postives = 91/212 (42.92%), Query Frame = 2
Query:  167 EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQA-------QCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFEDHSDPEKFIKAI 778
            +V  RV Y GVCH+DLH  K +W      P+V GHE  G +  +G   +  +K+G  VG+  L  SC  C+ C   +E  C +           G    G +    V+    +   P+  PL+  AP+LCAG+T Y  L                         ++A A G +V  I T   K++    + G D+FV     +DP++   A+
Sbjct:   39 DVQFRVLYCGVCHSDLHMVKNEWGVT-HYPIVPGHEIVGIVTEVGS-KVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVISTSLSKKEEAMQHLGVDEFV---VSTDPQQMQAAV 245          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_THET8 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tdh PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.788e-16
Identity = 57/150 (38.00%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  128 DHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS 571
            D PVP+     PGE+LVRV+ + +C TDLH WK D  A+ R+  PLV GHE +G + A+G G +   +VG +V ++     C  C  CR G    C   Q  G   DG F +Y V  A +    P  LP E AA +   G  V+     S
Sbjct:   17 DRPVPEPG---PGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPG-VRRPQVGDHVSLE-SHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGS 161          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 71/236 (30.08%), Postives = 98/236 (41.53%), Query Frame = 2
Query:  143 QQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCS---QAQCSGYSVDGT------------------FQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAIKD 784
            Q A  K  EV V+VD+S VCHTD +   G  P +   P+V GHEGAG + +IG+G + N++ G +V I      C +C+ CR G    CS   + Q  G   DGT                  F QY V     +  I    PL     + C   T + A+ +S K   G                    AA   R+IAID   DK      +GA  F+D     D  +++  + D
Sbjct:   28 QVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDP-EGAFPIVLGHEGAGIVESIGEGVI-NVRPGDHV-ILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYAKKFGATDFIDSSKVKDLVQYVIDVTD 260          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: TDH_THET2 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tdh PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 56/150 (37.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  128 DHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS 571
            D PVP+     PGE+LVRV+ + +C TDLH WK D  A+ R+  PLV GHE +G + A+G G +   +VG +V ++     C  C  CR G    C   +  G   DG F +Y V  A +    P  LP E AA +   G  V+     S
Sbjct:   17 DRPVPEPG---PGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPG-VKRPQVGDHVSLESHV-VCHACPACRTGNYHVCLNTKILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVHTVYAGS 161          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 69/224 (30.80%), Postives = 97/224 (43.30%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I    + C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K +L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTEXCGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 61/205 (29.76%), Postives = 87/205 (42.44%), Query Frame = 2
Query:  161 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ-------AQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASY-GADKFVDFEDHS 751
            P ++ ++V   G+CH+D+H  K D       P+V GHE  G ++ +G   +T  +VG  VG   +   C  C  C    E  C++           G    G F    V   R V  IPDGL  EQ A ++CAGVTVY  L+    +                   + A AMG  V  I + D KR     + GAD ++   D +
Sbjct:   34 PEDLYIKVLSCGICHSDIHQIKNDL-GMSHYPMVPGHEVVGEVLEVG-SEVTKYRVGDRVGTGIVVGCCRSCGPCNSDQEQYCNKKIWNYNDVYTDGKPTQGGFAGEIVVGQRFVVKIPDGLESEQDA-VMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDEN 235          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 69/224 (30.80%), Postives = 96/224 (42.86%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K +L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIK 246          
BLAST of FC872123 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.384e-15
Identity = 69/224 (30.80%), Postives = 96/224 (42.86%), Query Frame = 2
Query:  158 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATC---SQAQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEK 763
            K GEVL++V ++GVCHTD     GD P +   P+V GHEGAG +V +G+G +T++K G +V I      C +CE CR G    C    + Q  G   DG                  TF +Y V     +  I      E    + C   T   A+ N +K +PG                     A   R+IAIDT   K +L   +GA   ++  D+  P K
Sbjct:   26 KKGEVLIKVTHTGVCHTDAFTLSGDDP-EGVFPVVLGHEGAGVVVEVGEG-VTSVKPGDHV-IPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFELARRFGATDCINPNDYDKPIK 246          
The following BLAST results are available for this feature:
BLAST of FC872123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
CADH2_ORYSJ2.978e-1831.53Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
MTDH_APIGR3.293e-1731.31Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
GEDH1_OCIBA3.293e-1728.30Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
TDH_THET82.788e-1638.00L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
FADH1_SCHPO3.641e-1630.08Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
TDH_THET26.210e-1637.33L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
FRMA_ECOL66.210e-1630.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
CADH_EUCBO6.210e-1629.76Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
FRMA_ECOUT1.384e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL51.384e-1530.80S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872123 ID=FC872123; Name=FC872123; organism=Citrus clementina; type=EST; length=788bp
GGGGACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGT
CACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGAC
CACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGC
TGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTAT
GCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGT
CTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGG
AGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAAT
GGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAG
GCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTT
CCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACG
GATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTC
TATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCAT
TGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCG
CCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAA
CTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTC
GGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGT
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