FC872128
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND3_HUMAN (Rho-related GTP-binding protein RhoE OS=Homo sapiens GN=RND3 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29 Identity = 68/176 (38.64%), Postives = 103/176 (58.52%), Query Frame = 2 Query: 182 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 697 LS K I M ++ +KC V VGD GKT LL + + FP +YVPTVF+N++A+ ++ + L LWDT+G Y+ +RPLSY +D ++ F + + ++V KKW E++ + P ++LVG K DLR D ++ + P+S QG + K IGA YIECS+ +N Sbjct: 10 LSSKSI-MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND3_PIG (Rho-related GTP-binding protein RhoE OS=Sus scrofa GN=RND3 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29 Identity = 67/176 (38.07%), Postives = 103/176 (58.52%), Query Frame = 2 Query: 182 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 697 LS K I M ++ +KC V VGD G+T LL + + FP +YVPTVF+N++A+ ++ + L LWDT+G Y+ +RPLSY +D ++ F + + ++V KKW E++ + P ++LVG K DLR D ++ + P+S QG + K IGA YIECS+ +N Sbjct: 10 LSSKSI-MDPNQNVKCKIVVVGDSQCGRTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RHO3_SCHCO (GTP-binding protein Rho3 OS=Schizophyllum commune GN=RHO3 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29 Identity = 71/162 (43.83%), Postives = 95/162 (58.64%), Query Frame = 2 Query: 224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE---LRKLIGAPAYIECSSKTQQNV 700 K V GDGA GKT LL +T F Y PTVF+N+ ++ ++ V L LWDTAGQE+++RLR LSY V ++ FS+ + S ENV KW+ E+ Y PGV ++LV +K DLRDD +D T Q EE + + I A Y+ECSSK + V Sbjct: 19 KVVVCGDGACGKTSLLNVFTRGFFTQVYEPTVFENYVHDLYIDDQLVELSLWDTAGQEEFDRLRSLSYAETHVIMICFSVDNPTSLENVESKWLDEILEYCPGVKLVLVDSKCDLRDDPA-VLDRLQRYGTHTDQYEEGLGVARRIRASRYLECSSKHNRGV 179
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RACN_DICDI (Rho-related protein racN OS=Dictyostelium discoideum GN=racN PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28 Identity = 67/167 (40.12%), Postives = 98/167 (58.68%), Query Frame = 2 Query: 215 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD-----DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700 + IK V +GD +GKT LL++ FP +Y+PT+FDN + +N + +G WDT G E+Y R PLSY ++F++ FS+ S+ S+ N W+PE+ + P VPIILVGTK DLR+ DK F+ + +G E++ I A AY+ECSS + V Sbjct: 4 KIIKAVVLGDVTIGKTSLLVTKKIG-FPLEYIPTIFDNHYFEIKINDQIMRIGCWDTGGGEEYPR--PLSYPQTNLFLILFSISSRNSFNNCETYWLPEVTKFLPSVPIILVGTKTDLRNCDDYKDKSTFVTY--------EEGLEMKDKINASAYLECSSLLNKGV 159
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28 Identity = 69/174 (39.66%), Postives = 98/174 (56.32%), Query Frame = 2 Query: 224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH---PGAVP------------ISTAQGEELRKLIGAPAYIECSSKTQQNV 700 K V +GDGA GKT LL +T FP Y PTVF+N+ ++ V+ + L LWDTAGQE+++RLR LSY +L FS+ S+ S ENV KW+ E+ + GV ++LV K DLR ++ + PG++ I +G + K IGA Y+ECS+K + V Sbjct: 17 KIVILGDGACGKTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRSSDEYGNESAITPGSIQNQKYNGGGGNGLIPYDEGLAMAKQIGALRYLECSAKMNRGV 190
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND2_MOUSE (Rho-related GTP-binding protein RhoN OS=Mus musculus GN=Rnd2 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28 Identity = 57/159 (35.85%), Postives = 94/159 (59.12%), Query Frame = 2 Query: 224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 694 K V VGD GKT LL + + +P YVPTVF+N++A+ ++ + L +WDT+G Y+ +RPL+Y +D ++ F + + ++V KKW E + + P ++LVG KLD+R D + +P++ QG L K +GA +Y+ECSS++ + Sbjct: 9 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 167
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND2_HUMAN (Rho-related GTP-binding protein RhoN OS=Homo sapiens GN=RND2 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28 Identity = 57/159 (35.85%), Postives = 94/159 (59.12%), Query Frame = 2 Query: 224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 694 K V VGD GKT LL + + +P YVPTVF+N++A+ ++ + L +WDT+G Y+ +RPL+Y +D ++ F + + ++V KKW E + + P ++LVG KLD+R D + +P++ QG L K +GA +Y+ECSS++ + Sbjct: 9 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 167
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27 Identity = 71/182 (39.01%), Postives = 97/182 (53.30%), Query Frame = 2 Query: 224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD---------------DKQFFIDH--------PGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700 K V +GDGA GKT LL +T FP Y PTVF+N+ ++ V+ + L LWDTAGQE+++RLR LSY +L FS+ S+ S ENV KW+ E+ + GV ++LV K DLR+ D D+ G IS +G + K IGA Y+ECS+K + V Sbjct: 18 KIVILGDGACGKTSLLNVFTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGEITDHCEGVKLVLVALKCDLRNNENESNAITPNNIQQDNSVSNDNGNNINSTSNGKNLISYEEGLAMAKKIGALRYLECSAKLNKGV 199
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND1_MOUSE (Rho-related GTP-binding protein Rho6 OS=Mus musculus GN=Rnd1 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24 Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 2 Query: 224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 694 K V VGD GKT +L + +P YVPTVF+N++A + V L LWDT+G Y+ +RPL Y +D +L F + + ++ KKW E+ Y P ++L+G K DLR D ++ H PIS QG + K +GA Y+E S+ T + Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 173
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND1_HUMAN (Rho-related GTP-binding protein Rho6 OS=Homo sapiens GN=RND1 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24 Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 2 Query: 224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 694 K V VGD GKT +L + +P YVPTVF+N++A + V L LWDT+G Y+ +RPL Y +D +L F + + ++ KKW E+ Y P ++L+G K DLR D ++ H PIS QG + K +GA Y+E S+ T + Sbjct: 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 173 The following BLAST results are available for this feature:
BLAST of FC872128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872128 ID=FC872128; Name=FC872128; organism=Citrus clementina; type=EST; length=706bpback to top |