FC872128

Overview
NameFC872128
Unique NameFC872128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND3_HUMAN (Rho-related GTP-binding protein RhoE OS=Homo sapiens GN=RND3 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 68/176 (38.64%), Postives = 103/176 (58.52%), Query Frame = 2
Query:  182 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 697
            LS K I M  ++ +KC  V VGD   GKT LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S  QG  + K IGA  YIECS+   +N
Sbjct:   10 LSSKSI-MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND3_PIG (Rho-related GTP-binding protein RhoE OS=Sus scrofa GN=RND3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 67/176 (38.07%), Postives = 103/176 (58.52%), Query Frame = 2
Query:  182 LS*KKIKMSASRFIKC--VTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQN 697
            LS K I M  ++ +KC  V VGD   G+T LL  +  + FP +YVPTVF+N++A+  ++   + L LWDT+G   Y+ +RPLSY  +D  ++ F +    + ++V KKW  E++ + P   ++LVG K DLR D    ++  +    P+S  QG  + K IGA  YIECS+   +N
Sbjct:   10 LSSKSI-MDPNQNVKCKIVVVGDSQCGRTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RHO3_SCHCO (GTP-binding protein Rho3 OS=Schizophyllum commune GN=RHO3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 71/162 (43.83%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEE---LRKLIGAPAYIECSSKTQQNV 700
            K V  GDGA GKT LL  +T   F   Y PTVF+N+  ++ ++   V L LWDTAGQE+++RLR LSY    V ++ FS+ +  S ENV  KW+ E+  Y PGV ++LV +K DLRDD    +D        T Q EE   + + I A  Y+ECSSK  + V
Sbjct:   19 KVVVCGDGACGKTSLLNVFTRGFFTQVYEPTVFENYVHDLYIDDQLVELSLWDTAGQEEFDRLRSLSYAETHVIMICFSVDNPTSLENVESKWLDEILEYCPGVKLVLVDSKCDLRDDPA-VLDRLQRYGTHTDQYEEGLGVARRIRASRYLECSSKHNRGV 179          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RACN_DICDI (Rho-related protein racN OS=Dictyostelium discoideum GN=racN PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 67/167 (40.12%), Postives = 98/167 (58.68%), Query Frame = 2
Query:  215 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD-----DKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            + IK V +GD  +GKT LL++     FP +Y+PT+FDN    + +N   + +G WDT G E+Y R  PLSY   ++F++ FS+ S+ S+ N    W+PE+  + P VPIILVGTK DLR+     DK  F+ +         +G E++  I A AY+ECSS   + V
Sbjct:    4 KIIKAVVLGDVTIGKTSLLVTKKIG-FPLEYIPTIFDNHYFEIKINDQIMRIGCWDTGGGEEYPR--PLSYPQTNLFLILFSISSRNSFNNCETYWLPEVTKFLPSVPIILVGTKTDLRNCDDYKDKSTFVTY--------EEGLEMKDKINASAYLECSSLLNKGV 159          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 69/174 (39.66%), Postives = 98/174 (56.32%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDH---PGAVP------------ISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            K V +GDGA GKT LL  +T   FP  Y PTVF+N+  ++ V+   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E+  +  GV ++LV  K DLR   ++  +    PG++             I   +G  + K IGA  Y+ECS+K  + V
Sbjct:   17 KIVILGDGACGKTSLLNVFTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRSSDEYGNESAITPGSIQNQKYNGGGGNGLIPYDEGLAMAKQIGALRYLECSAKMNRGV 190          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND2_MOUSE (Rho-related GTP-binding protein RhoN OS=Mus musculus GN=Rnd2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 57/159 (35.85%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 694
            K V VGD   GKT LL  +  + +P  YVPTVF+N++A+  ++   + L +WDT+G   Y+ +RPL+Y  +D  ++ F +    + ++V KKW  E + + P   ++LVG KLD+R D      +     +P++  QG  L K +GA +Y+ECSS++ +
Sbjct:    9 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 167          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND2_HUMAN (Rho-related GTP-binding protein RhoN OS=Homo sapiens GN=RND2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 57/159 (35.85%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 694
            K V VGD   GKT LL  +  + +P  YVPTVF+N++A+  ++   + L +WDT+G   Y+ +RPL+Y  +D  ++ F +    + ++V KKW  E + + P   ++LVG KLD+R D      +     +P++  QG  L K +GA +Y+ECSS++ +
Sbjct:    9 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE 167          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 71/182 (39.01%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRD---------------DKQFFIDH--------PGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            K V +GDGA GKT LL  +T   FP  Y PTVF+N+  ++ V+   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E+  +  GV ++LV  K DLR+               D     D+         G   IS  +G  + K IGA  Y+ECS+K  + V
Sbjct:   18 KIVILGDGACGKTSLLNVFTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGEITDHCEGVKLVLVALKCDLRNNENESNAITPNNIQQDNSVSNDNGNNINSTSNGKNLISYEEGLAMAKKIGALRYLECSAKLNKGV 199          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND1_MOUSE (Rho-related GTP-binding protein Rho6 OS=Mus musculus GN=Rnd1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 694
            K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y+ +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D    ++  H    PIS  QG  + K +GA  Y+E S+ T +
Sbjct:   15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 173          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RND1_HUMAN (Rho-related GTP-binding protein Rho6 OS=Homo sapiens GN=RND1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFID--HPGAVPISTAQGEELRKLIGAPAYIECSSKTQQ 694
            K V VGD   GKT +L     + +P  YVPTVF+N++A +      V L LWDT+G   Y+ +RPL Y  +D  +L F +    + ++  KKW  E+  Y P   ++L+G K DLR D    ++  H    PIS  QG  + K +GA  Y+E S+ T +
Sbjct:   15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSE 173          
The following BLAST results are available for this feature:
BLAST of FC872128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RND3_HUMAN1.840e-2938.64Rho-related GTP-binding protein RhoE OS=Homo sapie... [more]
RND3_PIG4.099e-2938.07Rho-related GTP-binding protein RhoE OS=Sus scrofa... [more]
RHO3_SCHCO4.099e-2943.83GTP-binding protein Rho3 OS=Schizophyllum commune ... [more]
RACN_DICDI1.193e-2840.12Rho-related protein racN OS=Dictyostelium discoide... [more]
RHO3_ASHGO1.558e-2839.66GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RND2_MOUSE4.532e-2835.85Rho-related GTP-binding protein RhoN OS=Mus muscul... [more]
RND2_HUMAN4.532e-2835.85Rho-related GTP-binding protein RhoN OS=Homo sapie... [more]
RHO3_YEAST3.837e-2739.01GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
RND1_MOUSE1.365e-2437.11Rho-related GTP-binding protein Rho6 OS=Mus muscul... [more]
RND1_HUMAN1.365e-2437.11Rho-related GTP-binding protein Rho6 OS=Homo sapie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05701A01SK AbsCOv1 Citrus clementina cDNA clone C05701A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872128 ID=FC872128; Name=FC872128; organism=Citrus clementina; type=EST; length=706bp
CGGCCGGGGGCTGGCAAGATTGGTTCGCTCAACGAACGCTTCAACGGCAT
AATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCGAT
CGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCTCT
GAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAATAA
AAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGCT
GTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTAC
GGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCA
ATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGAT
TATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCT
TGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGT
GGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGTT
GGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGACCATCC
AGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTGA
TTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTG
AAGGCA
back to top