FC872128

Overview
NameFC872128
Unique NameFC872128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.349e-55
Identity = 104/163 (63.80%), Postives = 124/163 (76.07%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.349e-55
Identity = 104/163 (63.80%), Postives = 124/163 (76.07%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.680e-55
Identity = 104/163 (63.80%), Postives = 124/163 (76.07%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  L K I +  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.689e-55
Identity = 102/163 (62.58%), Postives = 126/163 (77.30%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK     +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.689e-55
Identity = 102/163 (62.58%), Postives = 126/163 (77.30%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S AS+ENV  KW PE++H+ P  PI+LVGTKLDLRDDK     +      PI+  QG  + + IG+  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 9.689e-55
Identity = 102/163 (62.58%), Postives = 125/163 (76.69%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FSL++ AS+ENV  KW PE++H+ P  PIILVGTKLDLRDDK     +      PI+  QG  + K IGA  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.159e-54
Identity = 104/163 (63.80%), Postives = 127/163 (77.91%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +S+ENV+ KW PE+ H+AP VPIILVGTKLD+R+DK  Q  +      PIS  QG    K I A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPEICHHAPNVPIILVGTKLDMREDKETQDRLKEKKLYPISYEQGLAKMKEINAVKYLECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.819e-54
Identity = 102/163 (62.58%), Postives = 127/163 (77.91%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S AS+ENV+ KW PE+ H+AP VPIILVGTKLD+R+D+  Q  +      P+S  QG    K I A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKYLECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.682e-54
Identity = 104/163 (63.80%), Postives = 127/163 (77.91%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+IS +SYENVS KW PE+ H+AP VPIILVGTK+D+R+DK  Q  +      P+S  QG    K I A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYENVSGKWGPEVFHHAPNVPIILVGTKMDMREDKETQDRLKEKKLYPVSYEQGLLKMKEINAFKYLECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RACA_ENTHI (Rho-related protein racA OS=Entamoeba histolytica GN=RACA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.202e-54
Identity = 98/163 (60.12%), Postives = 126/163 (77.30%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            +KCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SA V+V+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS++S  S++NVS KW PE+ H+ P  P +LVGTKLD+R+DK+    ++     PI+T QGE   K IGA  YIECS+ TQ+N++
Sbjct:    4 VKCVIVGDGAVGKTCLLISYTTNAFPNEYIPTVFDNYSATVMVDSKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSPPSFDNVSSKWQPEVSHHCPKTPCLLVGTKLDMREDKEQLKRLEEKKITPITTEQGEAKCKDIGAVKYIECSALTQKNLR 166          
The following BLAST results are available for this feature:
BLAST of FC872128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_HUMAN4.349e-5563.80Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]
RAC2_BOVIN4.349e-5563.80Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC2_MOUSE5.680e-5563.80Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC3_MOUSE9.689e-5562.58Ras-related C3 botulinum toxin substrate 3 OS=Mus ... [more]
RAC3_HUMAN9.689e-5562.58Ras-related C3 botulinum toxin substrate 3 OS=Homo... [more]
RAC1_DROME9.689e-5562.58Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RAC1A_DICDI2.159e-5463.80Rho-related protein rac1A OS=Dictyostelium discoid... [more]
RAC1B_DICDI2.819e-5462.58Rho-related protein rac1B OS=Dictyostelium discoid... [more]
RAC1C_DICDI3.682e-5463.80Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RACA_ENTHI8.202e-5460.12Rho-related protein racA OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionC05701A01SK AbsCOv1 Citrus clementina cDNA clone C05701A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872128 ID=FC872128; Name=FC872128; organism=Citrus clementina; type=EST; length=706bp
CGGCCGGGGGCTGGCAAGATTGGTTCGCTCAACGAACGCTTCAACGGCAT
AATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCGAT
CGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCTCT
GAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAATAA
AAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGCT
GTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTAC
GGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCA
ATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGAT
TATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCT
TGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGT
GGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGTT
GGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGACCATCC
AGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTGA
TTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTG
AAGGCA
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