FC872128

Overview
NameFC872128
Unique NameFC872128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.202e-54
Identity = 101/163 (61.96%), Postives = 124/163 (76.07%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+   VNLGLWDTAGQEDY+RLRPLSY   DVF++ FSL+S ASYENV   W P+++H+ P  PIIL+GTKLDLRDDK+    +      PI+  QG  L K I +  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.069e-53
Identity = 99/165 (60.00%), Postives = 126/165 (76.36%), Query Frame = 2
Query:  215 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            R +K V VGDGAVGKTC+LISYT+N FP +Y+PTVF+N+++++VV+   +NLGLWDTAGQEDY+RLRPLSY   DVF++ FS+I+ ASYENV  KW PE+  + P VPIILVGTK+D+RDD +    +     VPI   QG+EL K IGA  YIECS+ TQ N+K
Sbjct:    2 RPVKLVIVGDGAVGKTCMLISYTTNAFPNEYIPTVFENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRLAEKNIVPIQPPQGDELAKKIGAVKYIECSALTQANLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RACB_DICDI (Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.446e-52
Identity = 100/163 (61.35%), Postives = 125/163 (76.69%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IK V VGDGAVGKTCLLISYTSN+FPT+YVPTVFDN+SANV+V+  TV+LGLWDTAGQEDY+RLRPLSY   DVF++ F++IS+ SY NV  KW PE+ H+ P   IILVGTK DLR+DK+    +      P++  QGE++ K I A  Y+ECS+ TQ+ +K
Sbjct:    4 IKLVVVGDGAVGKTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPEVTHHCPNCTIILVGTKCDLREDKESLEKLREKHQQPLTFQQGEQMAKEIKAFCYMECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAC1_CAEEL (Ras-related protein ced-10 OS=Caenorhabditis elegans GN=ced-10 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.003e-51
Identity = 98/163 (60.12%), Postives = 122/163 (74.85%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G  +NLGLWDTAGQEDY+RLRPLSY   DVF++ F+L + AS+ENV  KW PE+ H+ P  PIILVGTK DLR+D+     +      P+S  QG  + K I A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.488e-51
Identity = 95/169 (56.21%), Postives = 121/169 (71.60%), Query Frame = 2
Query:  203 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            MSA+  IK V +GDGAVGKTCLLISY +N FP DY+PTVFDN+  N+      + LGLWDTAGQE+Y++LRPLSY  A+VF++ FS+ +  S+ENV  KW PE+ H+ P VP ILVGTKLD RDD+     +   G  PI+T QG +L + I A  Y+ECS+KT QN+K
Sbjct:    1 MSAAEVIKLVVIGDGAVGKTCLLISYANNRFPEDYIPTVFDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLK 169          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.213e-50
Identity = 94/163 (57.67%), Postives = 122/163 (74.85%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT+N FP+DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS+ S AS+ENV +KW PE+ H+ PGVP ++VGT++DLRDD   Q  +      P++  QGE L + +GA  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.213e-50
Identity = 95/163 (58.28%), Postives = 121/163 (74.23%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            IKCV VGDGAVGKTCLLISYT++ FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS+IS AS+ENV +KW PE+ H+ PGVPII+VGT+ DLR+D      +      PI+  QGE+L K + A  Y+ECS+ TQ+ +K
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTSKFPADYVPTVFDNYAVTVMIGDEPFTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPASFENVKEKWFPEVHHHCPGVPIIIVGTQTDLRNDDVILQRLHRQKLSPITQEQGEKLAKELRAVKYVECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: CDC42_YEAST (Cell division control protein 42 OS=Saccharomyces cerevisiae GN=CDC42 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 9.385e-50
Identity = 92/163 (56.44%), Postives = 120/163 (73.62%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            +KCV VGDGAVGKTCLLISYT+N FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVF++ FS+IS  S+ENV +KW PE+ H+ PGVP ++VGT++DLRDDK     +      PI++ QG  L + + A  Y+ECS+ TQ+ +K
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKEKWFPEVHHHCPGVPCLVVGTQIDLRDDKVIIEKLQRQRLRPITSEQGSRLARELKAVKYVECSALTQRGLK 166          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49
Identity = 90/163 (55.21%), Postives = 124/163 (76.07%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     PI   QG++L K IGA  Y+ECS+ TQ+ +K
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 172          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 89/163 (54.60%), Postives = 124/163 (76.07%), Query Frame = 2
Query:  221 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            +KCV VGDGAVGKTCLL+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PELK YAP VP +L+GT++DLRDD +    ++     P+   QG++L K IGA  Y+ECS+ TQ+ +K
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLK 172          
The following BLAST results are available for this feature:
BLAST of FC872128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_CAVPO8.202e-5461.96Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]
RECG_ENTHI9.069e-5360.00Rho-related protein racG OS=Entamoeba histolytica ... [more]
RACB_DICDI3.446e-5261.35Rho-related protein racB OS=Dictyostelium discoide... [more]
RAC1_CAEEL1.003e-5160.12Ras-related protein ced-10 OS=Caenorhabditis elega... [more]
RACC_DICDI8.488e-5156.21Rho-related protein racC OS=Dictyostelium discoide... [more]
CDC42_SCHPO4.213e-5057.67Cell division control protein 42 homolog OS=Schizo... [more]
CDC42_CANAL4.213e-5058.28Cell division control protein 42 homolog OS=Candid... [more]
CDC42_YEAST9.385e-5056.44Cell division control protein 42 OS=Saccharomyces ... [more]
RHOQ_HUMAN4.658e-4955.21Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOQ_RAT6.083e-4954.60Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionC05701A01SK AbsCOv1 Citrus clementina cDNA clone C05701A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872128 ID=FC872128; Name=FC872128; organism=Citrus clementina; type=EST; length=706bp
CGGCCGGGGGCTGGCAAGATTGGTTCGCTCAACGAACGCTTCAACGGCAT
AATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCGAT
CGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCTCT
GAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAATAA
AAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGCT
GTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTAC
GGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCA
ATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGAT
TATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCT
TGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGT
GGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGTT
GGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGACCATCC
AGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTGA
TTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTG
AAGGCA
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