FC872128

Overview
NameFC872128
Unique NameFC872128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 52/162 (32.10%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV-NGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V  +   V L +WDTAGQE Y  +    YRGA  FIL + + ++ S+ N  + W  ++K Y+     +ILVG K D+ +++           I T +G  L + +G   + E S+K   +V+
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VIPTEKGRLLAEQLGFD-FFEASAKENISVR 173          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH-YAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQG 631
            K V +G+GAVGKT L++ Y+ N F   +  T+  +F    + + G  + L +WDTAGQE Y+ L P+ YR +   I+ + +  + S+   ++ WI ELK      V + +VG K+DL  D+Q  +    A+  + + G
Sbjct:   18 KVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHK-ARNWIKELKRMLGDKVTLCIVGNKIDL--DRQRTVSEKDALEYAESVG 152          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 50/175 (28.57%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  212 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR-------DDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL        ++ + F +  G   +  S   GE +       A++E + K  QN++
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE-----DAFLEAAKKIYQNIQ 177          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 50/175 (28.57%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  212 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR-------DDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL        ++ + F +  G   +  S   GE +       A++E + K  QN++
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE-----DAFLEAAKKIYQNIQ 177          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 50/175 (28.57%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  212 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR-------DDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL        ++ + F +  G   +  S   GE +       A++E + K  QN++
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE-----DAFLEAAKKIYQNIQ 177          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 50/175 (28.57%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  212 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR-------DDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL        ++ + F +  G   +  S   GE +       A++E + K  QN++
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE-----DAFLEAAKKIYQNIQ 177          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 50/175 (28.57%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  212 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR-------DDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL        ++ + F +  G   +  S   GE +       A++E + K  QN++
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE-----DAFLEAAKKIYQNIQ 177          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 50/175 (28.57%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  212 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIILVGTKLDLR-------DDKQFFIDHPGA--VPISTAQGEELRKLIGAPAYIECSSKTQQNVK 703
            S   K + +GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  +    YRGA   ++ + +  +++Y ++S  W+ + ++   P   IIL+G K DL        ++ + F +  G   +  S   GE +       A++E + K  QN++
Sbjct:    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE-----DAFLEAAKKIYQNIQ 177          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  224 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIILVGTKLDLR 571
            K V +GD  VGK+ LL  +T N F  +   T+   F+     V G  V   +WDTAGQE Y  +    YRGA   +L + +   A++EN + +W+ EL+ H  P + ++L+G K DLR
Sbjct:   15 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAA-RWLRELRGHTDPNIVVMLIGNKCDLR 131          
BLAST of FC872128 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 48/159 (30.19%), Postives = 88/159 (55.35%), Query Frame = 2
Query:  227 CVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY-APGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNV 700
            CV +GDG VGKT + I + SN F   Y PT+ D +    +++     L + DTAGQ++ N +R    +  + FIL +S+ S++S++ + + ++ ++K   +  VPII++  K DL D++Q          ++  +GE      G  +++E S+K + N+
Sbjct:   18 CV-MGDGGVGKTSITIQFISNHFVNCYDPTIEDLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQI-QSFLDQIKFLKSEKVPIIMIANKSDLDDERQ----------VTYQEGENFANRFGM-SFMEVSAKYKLNI 163          
The following BLAST results are available for this feature:
BLAST of FC872128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_RAT2.184e-1432.10Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB21_GEOCY2.184e-1433.33Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
RAB14_RAT2.184e-1428.57Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB2.184e-1428.57Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG2.184e-1428.57Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE2.184e-1428.57Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN2.184e-1428.57Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK2.184e-1428.57Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAA1A_ARATH2.184e-1437.29Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RASU_DICDI2.852e-1430.19Ras-like protein rasU OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionC05701A01SK AbsCOv1 Citrus clementina cDNA clone C05701A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872128 ID=FC872128; Name=FC872128; organism=Citrus clementina; type=EST; length=706bp
CGGCCGGGGGCTGGCAAGATTGGTTCGCTCAACGAACGCTTCAACGGCAT
AATTTCCCGGCCGAAACAAGATGATGGCTAATTGAAGTTACGCTTGCGAT
CGCGGTTCTCCTCAGGCGTTGGGATCTGAGGGTTGTTTGTTATTTTCTCT
GAGATTTTATATTTTGGTAACTAAAAAGCCACTGTCTTAAAAAAAAATAA
AAATGAGCGCATCAAGGTTTATTAAGTGCGTGACGGTTGGCGATGGAGCT
GTGGGTAAAACTTGTTTGCTGATTTCTTACACCAGCAACACTTTCCCTAC
GGATTATGTGCCAACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTCA
ATGGCAGCACTGTTAATCTTGGATTATGGGATACTGCTGGACAAGAGGAT
TATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGTTTTCATTCT
TGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTATCCAAGAAGT
GGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATAATCCTTGTT
GGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCATTGACCATCC
AGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGAGGAAGCTGA
TTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAGCAGAATGTG
AAGGCA
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